RNA–Protein interactions for RNA: ENST00000331163.10

PDGFB-201, Transcript of platelet derived growth factor subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFB, Length 3,497 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-201ENST00000331163 TTC39CQ8N584 583 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 CASKIN2Q8WXE0 1202 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 SELENOSQ9BQE4 189 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 BCO2Q9BYV7 579 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 MCOLN1Q9GZU1 580 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 DMAP1Q9NPF5 467 aaPredicted RBP16.51■□□□□ 0.23
PDGFB-201ENST00000331163 WDR35Q9P2L0 1181 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 TMEM191CA6NGB0 347 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 KCNK1O00180 336 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 KCNN4O15554 427 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 LCA5LO95447 670 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 GSCP56915 257 aaPredicted RBP16.51■□□□□ 0.23
PDGFB-201ENST00000331163 OTUD4Q01804 1114 aaKnown RBP16.51■□□□□ 0.23
PDGFB-201ENST00000331163 PCBP1Q15365 356 aaKnown RBP eCLIP16.51■□□□□ 0.239e-6■■■■■ 29.7
PDGFB-201ENST00000331163 SPRED3Q2MJR0 410 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 HIBCHQ6NVY1 386 aaPredicted RBP16.51■□□□□ 0.23
PDGFB-201ENST00000331163 NPAS4Q8IUM7 802 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 ATP6V1G3Q96LB4 118 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 TACO1Q9BSH4 297 aaKnown RBP16.51■□□□□ 0.23
PDGFB-201ENST00000331163 CNPY3Q9BT09 278 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 UBN1Q9NPG3 1134 aa16.51■□□□□ 0.23
PDGFB-201ENST00000331163 MTRF1LQ9UGC7 380 aaKnown RBP16.51■□□□□ 0.23
PDGFB-201ENST00000331163 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.51■□□□□ 0.23
PDGFB-201ENST00000331163 SF3B1O75533 1304 aaKnown RBP eCLIP16.51■□□□□ 0.23
PDGFB-201ENST00000331163 TSPAN3O60637 253 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 LRCH4O75427 683 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 KRT71Q3SY84 523 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 EFHC2Q5JST6 749 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 CLEC20AQ6ZU45 233 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 MDM1Q8TC05 714 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 DNPEPQ9ULA0 475 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 AP4E1Q9UPM8 1137 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 PHF24Q9UPV7 400 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 PRUNE2Q8WUY3 3088 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 FGBP02675 491 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 KLRC2P26717 231 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 IL1R2P27930 398 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 ALDH1A3P47895 512 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 FNTAP49354 379 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 ADCY2Q08462 1091 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 STILQ15468 1287 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 PSMD5Q16401 504 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 RTP2Q5QGT7 225 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 DCAF12L1Q5VU92 463 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 PHF13Q86YI8 300 aaPredicted RBP16.5■□□□□ 0.23
PDGFB-201ENST00000331163 ANKMY2Q8IV38 441 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 CTAGE3PQ8IX95 158 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 LINC01599Q8WXQ3 324 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 RBM41Q96IZ5 413 aaKnown RBP16.5■□□□□ 0.23
PDGFB-201ENST00000331163 C9orf72Q96LT7 481 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 DUSP16Q9BY84 665 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 PIDD1Q9HB75 910 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 PCDHB5Q9Y5E4 795 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 CDH23Q9H251 3354 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 SLC12A8A0AV02 714 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 ARHGEF37A1IGU5 675 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 LTFP02788 710 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 RPL9P32969 192 aaKnown RBP16.5■□□□□ 0.23
PDGFB-201ENST00000331163 TPI1P60174 286 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 QPCTQ16769 361 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 CA9Q16790 459 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 UNC93AQ86WB7 457 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 THOC1Q96FV9 657 aaKnown RBP16.5■□□□□ 0.23
PDGFB-201ENST00000331163 FAM161BQ96MY7 647 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 ZNF558Q96NG5 402 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 APOL2Q9BQE5 337 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 TTPALQ9BTX7 342 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 CARD9Q9H257 536 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 KIAA1257Q9ULG3 409 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 NME7Q9Y5B8 376 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 TRIP11Q15643 1979 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 ATP8B3O60423 1300 aa16.5■□□□□ 0.23
PDGFB-201ENST00000331163 SIGLEC16A6NMB1 481 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 POC1B-GALNT4F8VUJ3 575 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 MYL4P12829 197 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 ETFBP38117 255 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 EFHC1Q5JVL4 640 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 KCNT2Q6UVM3 1135 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 JAMLQ86YT9 394 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 RAB17Q9H0T7 212 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 ANAPC5Q9UJX4 755 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 SLC4A7Q9Y6M7 1214 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 PLXNA1Q9UIW2 1896 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 CKMP06732 381 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 HSPA8P11142 646 aaKnown RBP16.49■□□□□ 0.23
PDGFB-201ENST00000331163 ITGB8P26012 769 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 CST5P28325 142 aaPredicted RBP16.49■□□□□ 0.23
PDGFB-201ENST00000331163 KIAA0319Q5VV43 1072 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 PARP9Q8IXQ6 854 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 PLK2Q9NYY3 685 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 SLC5A3P53794 718 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 TOP6BLQ8N6T0 577 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 PDCD6IPQ8WUM4 868 aaKnown RBP16.49■□□□□ 0.23
PDGFB-201ENST00000331163 SNRNP25Q9BV90 132 aaKnown RBP16.49■□□□□ 0.23
PDGFB-201ENST00000331163 TKTL2Q9H0I9 626 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 RGS18Q9NS28 235 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 CXXC1Q9P0U4 656 aaPredicted RBP16.49■□□□□ 0.23
PDGFB-201ENST00000331163 PCDHB12Q9Y5F1 795 aa16.49■□□□□ 0.23
PDGFB-201ENST00000331163 MYOGP15173 224 aa16.48■□□□□ 0.23
PDGFB-201ENST00000331163 GOT1P17174 413 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms