RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 RGL2O15211 777 aa13.96□□□□□ -0.17
CHRFAM7A-201ENST00000299847 LAMTOR4Q0VGL1 99 aa13.96□□□□□ -0.17
CHRFAM7A-201ENST00000299847 DOK6Q6PKX4 331 aa13.96□□□□□ -0.17
CHRFAM7A-201ENST00000299847 RNF148Q8N7C7 305 aa13.96□□□□□ -0.17
CHRFAM7A-201ENST00000299847 PPP1R14AQ96A00 147 aa13.96□□□□□ -0.17
CHRFAM7A-201ENST00000299847 ABCA6Q8N139 1617 aa13.96□□□□□ -0.18
CHRFAM7A-201ENST00000299847 O00370 1275 aa13.96□□□□□ -0.18
CHRFAM7A-201ENST00000299847 NAMPTP43490 491 aa13.96□□□□□ -0.18
CHRFAM7A-201ENST00000299847 SUGP1Q8IWZ8 645 aaKnown RBP13.96□□□□□ -0.18
CHRFAM7A-201ENST00000299847 DNAJB3Q8WWF6 145 aa13.96□□□□□ -0.18
CHRFAM7A-201ENST00000299847 PDGFCQ9NRA1 345 aa13.96□□□□□ -0.18
CHRFAM7A-201ENST00000299847 SCAMP3O14828 347 aaKnown RBP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 GLP2RO95838 553 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 PTPAQ15257 358 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 KHDRBS2Q5VWX1 349 aaKnown RBP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 LRRC6Q86X45 466 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 ZNF512BQ96KM6 892 aaPredicted RBP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 ATP6V1HQ9UI12 483 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 COPG1Q9Y678 874 aaKnown RBP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 CCDC130P13994 396 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 VAC14Q08AM6 782 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 CSTF3Q12996 717 aaKnown RBP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 NECAB2Q7Z6G3 386 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 ENGASEQ8NFI3 743 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 MYCBPAPQ8TBZ2 947 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 SERAC1Q96JX3 654 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 VANGL2Q9ULK5 521 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 F8VZ95 297 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 MTSS1O43312 755 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 AKAP3O75969 853 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 THRAP10827 490 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 ADIGQ0VDE8 80 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 STX5Q13190 355 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 SHROOM1Q2M3G4 852 aaPredicted RBP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 TRIM16LQ309B1 348 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 SETD3Q86TU7 594 aaPredicted RBP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 LRRN4CLQ8ND94 238 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 ZSCAN18Q8TBC5 510 aaPredicted RBP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 NUDT5Q9UKK9 219 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 H7C4K7 107 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 ERVK-10P10266 1014 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 SNRPFP62306 86 aaKnown RBP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 CHRNB3Q05901 458 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 ZCWPW2Q504Y3 356 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 ANKS6Q68DC2 871 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 ZCCHC23Q6ZST2 131 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 DDTLA6NHG4 134 aaPredicted RBP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 MOXD2PA6NHM9 499 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 MICAL2O94851 1124 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 GLI1P08151 1106 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 IL5RAQ01344 420 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 PHKG1Q16816 387 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 PCNX4Q63HM2 1172 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 NYAP1Q6ZVC0 841 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 PLEKHH3Q7Z736 793 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 UTP15Q8TED0 518 aaKnown RBP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 UBE2OQ9C0C9 1292 aaKnown RBP13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 LRRC40Q9H9A6 602 aa13.95□□□□□ -0.18
CHRFAM7A-201ENST00000299847 THP07101 528 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 HPGDP15428 266 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 GARTP22102 1010 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 MGAT1P26572 445 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 STIP1P31948 543 aaKnown RBP13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 NBPF12Q5TAG4 269 aaPredicted RBP13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 TYW3Q6IPR3 259 aaKnown RBP13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 TIGD7Q6NT04 549 aaPredicted RBP13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 EFL1Q7Z2Z2 1120 aaKnown RBP13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 ATG16L2Q8NAA4 619 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 CYP2W1Q8TAV3 490 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 DEPDC7Q96QD5 511 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 PPCSQ9HAB8 311 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 IQGAP3Q86VI3 1631 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 SLC1A6P48664 564 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 BCAT1P54687 386 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 PDIA6Q15084 440 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 IZUMO2Q6UXV1 221 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 TRMT11Q7Z4G4 463 aaKnown RBP13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 FBXO25Q8TCJ0 367 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 LRRN4Q8WUT4 740 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 PRCCQ92733 491 aaPredicted RBP13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 MARK4Q96L34 752 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 SH3BP4Q9P0V3 963 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 SOX13Q9UN79 622 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 CDH8P55286 799 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 AADACL2Q6P093 401 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 MRPS31Q92665 395 aaKnown RBP13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 SH3GL2Q99962 352 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 WHRNQ9P202 907 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 TBKBP1A7MCY6 615 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 FAM25AB3EWG3 89 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 FAM25CB3EWG5 89 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 FAM25GB3EWG6 89 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 H3BQF6 201 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 CPA3P15088 417 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 SREBF2Q12772 1141 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 TROAPQ12815 778 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 ZNF284Q2VY69 593 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 DGKKQ5KSL6 1271 aa13.94□□□□□ -0.18
CHRFAM7A-201ENST00000299847 DNAJC14Q6Y2X3 702 aaPredicted RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms