RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 FBXW8Q8N3Y1 598 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 CCDC33Q8N5R6 958 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 TRIML2Q8N7C3 387 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 TTLL6Q8N841 843 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 ZSCAN18Q8TBC5 510 aaPredicted RBP13.96□□□□□ -0.18
SKA3-201ENST00000298260 BTBD9Q96Q07 612 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 CAAP1Q9H8G2 361 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 C1orf112Q9NSG2 853 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 FZD1Q9UP38 647 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 APOBEC2Q9Y235 224 aaKnown RBP13.96□□□□□ -0.18
SKA3-201ENST00000298260 PCDHB4Q9Y5E5 795 aa13.96□□□□□ -0.18
SKA3-201ENST00000298260 LY75O60449 1722 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 HMX2A2RU54 273 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 KLF11O14901 512 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 ZBTB14O43829 449 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 FAM58BPP0C7Q3 252 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 XRCC1P18887 633 aaPredicted RBP13.95□□□□□ -0.18
SKA3-201ENST00000298260 GNA15P30679 374 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 HOXD12P35452 270 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 PDE1CQ14123 709 aaPredicted RBP13.95□□□□□ -0.18
SKA3-201ENST00000298260 FASTKD1Q53R41 847 aaKnown RBP13.95□□□□□ -0.18
SKA3-201ENST00000298260 HSP90AA5PQ58FG0 334 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 OGFOD2Q6N063 350 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 LPCAT2Q7L5N7 544 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 RTKN2Q8IZC4 609 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 ADGRF2Q8IZF7 708 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 ACTRT2Q8TDY3 377 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 NKD2Q969F2 451 aaPredicted RBP13.95□□□□□ -0.18
SKA3-201ENST00000298260 VTI1AQ96AJ9 217 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 LRGUKQ96M69 825 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 CCT7Q99832 543 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 DRG1Q9Y295 367 aaKnown RBP13.95□□□□□ -0.18
SKA3-201ENST00000298260 GOLGA8QA0A0J9YX86 632 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 ARHGAP10A1A4S6 786 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 GOLGA8OA6NCC3 632 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 BTBD19C9JJ37 291 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 GOLGA8NF8WBI6 632 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 CASQ2O14958 399 aaPredicted RBP13.95□□□□□ -0.18
SKA3-201ENST00000298260 CSPG5O95196 566 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 BPGMP07738 259 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 SLC5A3P53794 718 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 ABCB5Q2M3G0 1257 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 PLEKHA7Q6IQ23 1121 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 SLC39A4Q6P5W5 647 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 BBS5Q8N3I7 341 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 PKP2Q99959 881 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 PLAC1Q9HBJ0 212 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 RSL24D1Q9UHA3 163 aaKnown RBP13.95□□□□□ -0.18
SKA3-201ENST00000298260 ZHX2Q9Y6X8 837 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 NFASCO94856 1347 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 PTPRJQ12913 1337 aa13.95□□□□□ -0.18
SKA3-201ENST00000298260 E7ESA3 106 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 IPO5O00410 1097 aaKnown RBP13.94□□□□□ -0.18
SKA3-201ENST00000298260 NOP56O00567 594 aaKnown RBP13.94□□□□□ -0.18
SKA3-201ENST00000298260 SNNO75324 88 aaPredicted RBP13.94□□□□□ -0.18
SKA3-201ENST00000298260 EPHA3P29320 983 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 SERPINB5P36952 375 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 NDST2P52849 883 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 JAG1P78504 1218 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 MS4A2Q01362 244 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 CTBSQ01459 385 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 SPP2Q13103 211 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 APOFQ13790 326 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 SLC27A3Q5K4L6 730 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 TTC39BQ5VTQ0 682 aaPredicted RBP13.94□□□□□ -0.18
SKA3-201ENST00000298260 PDPK2PQ6A1A2 396 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 Q6ZNX1 250 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 SLC26A11Q86WA9 606 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 GLT8D2Q9H1C3 349 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 RNPEPQ9H4A4 650 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 PPCSQ9HAB8 311 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 MRPL47Q9HD33 250 aaKnown RBP13.94□□□□□ -0.18
SKA3-201ENST00000298260 PIH1D1Q9NWS0 290 aaKnown RBP13.94□□□□□ -0.18
SKA3-201ENST00000298260 ADAM23O75077 832 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 ENTPD3O75355 529 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 NDUFB10O96000 172 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 AMHP03971 560 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 SNRPAP09012 282 aaKnown RBP13.94□□□□□ -0.18
SKA3-201ENST00000298260 P4HA1P13674 534 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 HALP42357 657 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 THOP1P52888 689 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 ATP1A4Q13733 1029 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 DPYSL3Q14195 570 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 BRDTQ58F21 947 aaPredicted RBP13.94□□□□□ -0.18
SKA3-201ENST00000298260 TMEM53Q6P2H8 277 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 DRICH1Q6PGQ1 229 aaPredicted RBP13.94□□□□□ -0.18
SKA3-201ENST00000298260 TRIM72Q6ZMU5 477 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 EMC1Q8N766 993 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 PIWIL2Q8TC59 973 aaKnown RBP13.94□□□□□ -0.18
SKA3-201ENST00000298260 ZFRQ96KR1 1074 aaKnown RBP13.94□□□□□ -0.18
SKA3-201ENST00000298260 C17orf75Q9HAS0 396 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 APOBEC3GQ9HC16 384 aaKnown RBP13.94□□□□□ -0.18
SKA3-201ENST00000298260 HOMER2Q9NSB8 354 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 EFR3BQ9Y2G0 817 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 RNF11Q9Y3C5 154 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 TTLL3Q9Y4R7 772 aa13.94□□□□□ -0.18
SKA3-201ENST00000298260 TMEM191CA6NGB0 347 aa13.93□□□□□ -0.18
SKA3-201ENST00000298260 PLOD2O00469 737 aa13.93□□□□□ -0.18
SKA3-201ENST00000298260 C1QAP02745 245 aa13.93□□□□□ -0.18
SKA3-201ENST00000298260 TMEM191BP0C7N4 346 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms