RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 NDUFAF2Q8N183 169 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 SDAD1Q9NVU7 687 aaKnown RBP eCLIP25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 AKT3Q9Y243 479 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 TNFSF13BQ9Y275 285 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 DPPA5A6NC42 116 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 MAP3K13O43283 966 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 SNRPAP09012 282 aaKnown RBP25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 GABRB2P47870 512 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 AQP5P55064 265 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 SLC10A2Q12908 348 aaPredicted RBP25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 TFDP2Q14188 446 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 SNX30Q5VWJ9 437 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 CHSY1Q86X52 802 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 PDCD7Q8N8D1 485 aaKnown RBP25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 FAM161BQ96MY7 647 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 EBF4Q9BQW3 602 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 PAK5Q9P286 719 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 PLLPQ9Y342 182 aa25.31■■□□□ 1.64
SPTSSA-201ENST00000298130 SSC5DA1L4H1 1573 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 HMX2A2RU54 273 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 SLC15A5A6NIM6 579 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 CHADO15335 359 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 VDRP11473 427 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 ADORA2AP29274 412 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 C7orf31Q8N865 590 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 ENO4A6NNW6 628 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 KRT37O76014 449 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 LINGO3P0C6S8 592 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 NUDCD3Q8IVD9 361 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 DDX55Q8NHQ9 600 aaKnown RBP eCLIP25.3■■□□□ 1.643e-7■□□□□ 9.2
SPTSSA-201ENST00000298130 FBXO41Q8TF61 875 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 E2F7Q96AV8 911 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 FGD4Q96M96 766 aa25.3■■□□□ 1.64
SPTSSA-201ENST00000298130 TXNP10599 105 aaKnown RBP25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 ARF4P18085 180 aaPredicted RBP25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 PGM1P36871 562 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 TTC30AQ86WT1 665 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 SLC25A41Q8N5S1 370 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 OTUD5Q96G74 571 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 MRPL45Q9BRJ2 306 aaKnown RBP25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 PHACTR1Q9C0D0 580 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 DHX35Q9H5Z1 703 aaKnown RBP25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 SPDYE5A6NIY4 337 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 I3L4J1 428 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 LYPLA1O75608 230 aaPredicted RBP25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 GABBR2O75899 941 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 TGFB3P10600 412 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 INSRRP14616 1297 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 UBAP2LQ14157 1087 aaKnown RBP25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 MOB2Q70IA6 237 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 TEX9Q8N6V9 391 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 PDZD7Q9H5P4 517 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 ZFATQ9P243 1243 aa25.29■■□□□ 1.64
SPTSSA-201ENST00000298130 MEI4A8MW99 385 aa25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 IRF6O14896 467 aa25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 NVLO15381 856 aaKnown RBP25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 ATP6V1C1P21283 382 aa25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 TMEM132DQ14C87 1099 aa25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 NAIF1Q69YI7 327 aaPredicted RBP25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 RILPQ96NA2 401 aa25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 KLC2Q9H0B6 622 aa25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 BARX2Q9UMQ3 279 aaPredicted RBP25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 NME7Q9Y5B8 376 aa25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 IL18RAPO95256 599 aa25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 FAM47CQ5HY64 1035 aa25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 CASC4Q6P4E1 433 aa25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 APOBEC3FQ8IUX4 373 aaKnown RBP25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 SCG3Q8WXD2 468 aaKnown RBP25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 SNX9Q9Y5X1 595 aa25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 MYO18AQ92614 2054 aaKnown RBP25.28■■□□□ 1.64
SPTSSA-201ENST00000298130 DCAF8L1A6NGE4 600 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 APOEP02649 317 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 PHKA2P46019 1235 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 ZNF534Q76KX8 674 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 RBM15BQ8NDT2 890 aaKnown RBP25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 SYT15Q9BQS2 421 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 SHCBP1LQ9BZQ2 653 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 PSMG1O95456 288 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 CYP2F1P24903 491 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 SDC4P31431 198 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 GLRA4Q5JXX5 417 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 MAP7D3Q8IWC1 876 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 PYROXD2Q8N2H3 581 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 KHSRPQ92945 711 aaKnown RBP eCLIP25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 ELP3Q9H9T3 547 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 GBA2Q9HCG7 927 aaPredicted RBP25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 DPP3Q9NY33 737 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 RARBP10826 455 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 HDAC4P56524 1084 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 TMEM62Q0P6H9 643 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 DENND5BQ6ZUT9 1274 aa25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 NDRG1Q92597 394 aaKnown RBP25.27■■□□□ 1.64
SPTSSA-201ENST00000298130 KIF12Q96FN5 646 aa25.26■■□□□ 1.63
SPTSSA-201ENST00000298130 CLMNQ96JQ2 1002 aa25.26■■□□□ 1.63
SPTSSA-201ENST00000298130 NT5C1AQ9BXI3 368 aa25.26■■□□□ 1.63
SPTSSA-201ENST00000298130 TMPRSS4Q9NRS4 437 aa25.26■■□□□ 1.63
SPTSSA-201ENST00000298130 HES2Q9Y543 173 aa25.26■■□□□ 1.63
SPTSSA-201ENST00000298130 TNS1Q9HBL0 1735 aaKnown RBP25.26■■□□□ 1.63
SPTSSA-201ENST00000298130 MCM3APO60318 1980 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms