RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 MROH7Q68CQ1 1323 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 M0R3G1 203 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 HNRNPRO43390 633 aaKnown RBP15.86■□□□□ 0.13
SHH-201ENST00000297261 ESRRBO95718 433 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 SP100P23497 879 aaPredicted RBP15.86■□□□□ 0.13
SHH-201ENST00000297261 CYP24A1Q07973 514 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 DCTN2Q13561 401 aaKnown RBP15.86■□□□□ 0.13
SHH-201ENST00000297261 CLEC16AQ2KHT3 1053 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 WLSQ5T9L3 541 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 RIPOR1Q6ZS17 1223 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 DIS3LQ8TF46 1054 aaKnown RBP15.86■□□□□ 0.13
SHH-201ENST00000297261 TRAPPC12Q8WVT3 735 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 BCAS3Q9H6U6 928 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 EFCAB1Q9HAE3 211 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 COL5A3P25940 1745 aaPredicted RBP15.86■□□□□ 0.13
SHH-201ENST00000297261 KBTBD13C9JR72 458 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 EDF1O60869 148 aaKnown RBP15.85■□□□□ 0.13
SHH-201ENST00000297261 NOL4O94818 638 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 RALBP11234 206 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 PAMP19021 973 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 ADORA2BP29275 332 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 CA8P35219 290 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 RGS2P41220 211 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 PDPK2PQ6A1A2 396 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 ZCCHC9Q8N567 271 aaKnown RBP15.85■□□□□ 0.13
SHH-201ENST00000297261 EFCAB3Q8N7B9 438 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 SAE1Q9UBE0 346 aaPredicted RBP15.85■□□□□ 0.13
SHH-201ENST00000297261 BTNL10A8MVZ5 291 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 RBAK-RBAKDNI3L0D1 243 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 PFDN6O15212 129 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 PSMD7P51665 324 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 DLG4P78352 724 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 NSUN2Q08J23 767 aaKnown RBP eCLIP15.85■□□□□ 0.13
SHH-201ENST00000297261 PDAP1Q13442 181 aaKnown RBP15.85■□□□□ 0.13
SHH-201ENST00000297261 ACAP1Q15027 740 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 BMT2Q1RMZ1 405 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 ZBTB49Q6ZSB9 765 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 SETD3Q86TU7 594 aaPredicted RBP15.85■□□□□ 0.13
SHH-201ENST00000297261 EPS8L1Q8TE68 723 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 RPS6KL1Q9Y6S9 549 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 ZNF536O15090 1300 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 ITGA9Q13797 1035 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 ARL13BQ3SXY8 428 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 TWF2Q6IBS0 349 aaKnown RBP15.85■□□□□ 0.13
SHH-201ENST00000297261 ADCK1Q86TW2 530 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 MAP4K3Q8IVH8 894 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 UBA3Q8TBC4 463 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 AFG1LQ8WV93 481 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 TLCD1Q96CP7 247 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 TMEM79Q9BSE2 394 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 KLHL25Q9H0H3 589 aa15.85■□□□□ 0.13
SHH-201ENST00000297261 SCHIP1Q9P0W5 487 aaPredicted RBP15.85■□□□□ 0.13
SHH-201ENST00000297261 ARAP2Q8WZ64 1704 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 A0A1W2PPM1 405 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 CSDE1O75534 798 aaKnown RBP15.84■□□□□ 0.13
SHH-201ENST00000297261 ANPEPP15144 967 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 ORC1Q13415 861 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 LBX2Q6XYB7 198 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 ARMCX2Q7L311 632 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 CCNJLQ8IV13 435 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 KIF12Q96FN5 646 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 DACH2Q96NX9 599 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 GALNT8Q9NY28 637 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 ZNF214Q9UL59 606 aaPredicted RBP15.84■□□□□ 0.13
SHH-201ENST00000297261 SPATA31C2B4DYI2 1134 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 GLRA3O75311 464 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 BANF1O75531 89 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 ADRM1Q16186 407 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 CLVS1Q8IUQ0 354 aaPredicted RBP15.84■□□□□ 0.13
SHH-201ENST00000297261 ZNF513Q8N8E2 541 aaPredicted RBP15.84■□□□□ 0.13
SHH-201ENST00000297261 APOPT1Q96IL0 206 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 EIF2AQ9BY44 585 aaKnown RBP15.84■□□□□ 0.13
SHH-201ENST00000297261 CPA4Q9UI42 421 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 C4AP0C0L4 1744 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 TCRBV7S2A1N4TA0A589 114 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 H0Y626 953 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 TRIM16O95361 564 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 TNFAIP8O95379 198 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 LCA5LO95447 670 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 POLBP06746 335 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 ADORA2AP29274 412 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 MRPS22P82650 360 aaKnown RBP15.84■□□□□ 0.13
SHH-201ENST00000297261 ATP13A4Q4VNC1 1196 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 COPS5Q92905 334 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 RRAGCQ9HB90 399 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 CYLDQ9NQC7 956 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 LTBP3Q9NS15 1303 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 ARL8BQ9NVJ2 186 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 AP4S1Q9Y587 144 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 SNCAIPQ9Y6H5 919 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 LIN7AO14910 233 aaPredicted RBP15.84■□□□□ 0.13
SHH-201ENST00000297261 GAS2O43903 313 aaKnown RBP15.84■□□□□ 0.13
SHH-201ENST00000297261 USP1O94782 785 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 KRT75O95678 551 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 APOA1P02647 267 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 KRT8P05787 483 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 LCP1P13796 627 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 GLRBP48167 497 aa15.84■□□□□ 0.13
SHH-201ENST00000297261 NLRP11P59045 1033 aaKnown RBP15.84■□□□□ 0.13
SHH-201ENST00000297261 GTF2BQ00403 316 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms