RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 AAGABQ6PD74 315 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 KYAT3Q6YP21 454 aaKnown RBP10.74□□□□□ -0.69
UPF3B-201ENST00000276201 MAEAQ7L5Y9 396 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 PRUNE1Q86TP1 453 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 MYLK4Q86YV6 388 aaPredicted RBP10.74□□□□□ -0.69
UPF3B-201ENST00000276201 TMPRSS6Q8IU80 811 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 LINC01465Q8N7H1 131 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 KCNN1Q92952 543 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 LRCH3Q96II8 777 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 OLFM3Q96PB7 478 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 HAPLN3Q96S86 360 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 SH2D3AQ9BRG2 576 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 EPB41L1Q9H4G0 881 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 PIDD1Q9HB75 910 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 KRT82Q9NSB4 513 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 TAS2R1Q9NYW7 299 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 HEY2Q9UBP5 337 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 CDY2AQ9Y6F7 541 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 EVPLQ92817 2033 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 POC1B-GALNT4F8VUJ3 575 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 ETV4P43268 484 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 CLCN3P51790 818 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 TAS2R40P59535 323 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 CLDN10P78369 228 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 TMEM62Q0P6H9 643 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 RNF220Q5VTB9 566 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 CNKSR3Q6P9H4 555 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 ARHGAP22Q7Z5H3 698 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 MAP4K3Q8IVH8 894 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 TRIM42Q8IWZ5 723 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 C4orf19Q8IY42 314 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 C4orf33Q8N1A6 199 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 VPS52Q8N1B4 723 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 RFWD2Q8NHY2 731 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 ITFG2Q969R8 447 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 MCUR1Q96AQ8 359 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 GBP5Q96PP8 586 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 TSSK1BQ9BXA7 367 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 C1orf21Q9H246 121 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 KCNK4Q9NYG8 393 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 CNTN3Q9P232 1028 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 IP6K2Q9UHH9 426 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 CNTN6Q9UQ52 1028 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 NUMBLQ9Y6R0 609 aa10.74□□□□□ -0.69
UPF3B-201ENST00000276201 CLUHO75153 1309 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 A0A1W2PPM1 405 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 HGSO14964 777 aaPredicted RBP10.73□□□□□ -0.69
UPF3B-201ENST00000276201 DKC1O60832 514 aaKnown RBP eCLIP10.73□□□□□ -0.698e-7■■■□□ 17.2
UPF3B-201ENST00000276201 FKBP6O75344 327 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 RPLP2P05387 115 aaKnown RBP10.73□□□□□ -0.69
UPF3B-201ENST00000276201 DLDP09622 509 aaKnown RBP10.73□□□□□ -0.69
UPF3B-201ENST00000276201 KRT4P19013 534 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 NSFP46459 744 aaKnown RBP10.73□□□□□ -0.69
UPF3B-201ENST00000276201 VPS41P49754 854 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 RARRES1P49788 294 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 GPX6P59796 221 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 LPIN1Q14693 890 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 WDR72Q3MJ13 1102 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 GSTA5Q7RTV2 222 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 LRRC71Q8N4P6 559 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 RAB3IL1Q8TBN0 382 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 CCDC110Q8TBZ0 833 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 PPP2R3CQ969Q6 453 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 SLITRK1Q96PX8 696 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 VPS37BQ9H9H4 285 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 MKS1Q9NXB0 559 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 DDX56Q9NY93 547 aaKnown RBP10.73□□□□□ -0.69
UPF3B-201ENST00000276201 NDUFA13Q9P0J0 144 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 PPME1Q9Y570 386 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 TRPV2Q9Y5S1 764 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 COMMD3-BMI1R4GMX3 469 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 ZBBXA8MT70 800 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 CAPN14A8MX76 684 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 LYNP07948 512 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 ESRRAP11474 423 aaPredicted RBP10.73□□□□□ -0.69
UPF3B-201ENST00000276201 ADRA1DP25100 572 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 YWHABP31946 246 aaKnown RBP10.73□□□□□ -0.69
UPF3B-201ENST00000276201 ABCD1P33897 745 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 ARSEP51690 589 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 CYP24A1Q07973 514 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 MAMLD1Q13495 774 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 DNAL1Q4LDG9 190 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 EFCAB12Q6NXP0 572 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 RINLQ6ZS11 566 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 NME8Q8N427 588 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 DBF4BQ8NFT6 615 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 DCAKDQ8WVC6 231 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 SPIRE2Q8WWL2 714 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 MIS12Q9H081 205 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 MTIF3Q9H2K0 278 aaKnown RBP10.73□□□□□ -0.69
UPF3B-201ENST00000276201 CYP26B1Q9NR63 512 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 ARHGEF4Q9NR80 690 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 STRIP2Q9ULQ0 834 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 SORCS3Q9UPU3 1222 aa10.73□□□□□ -0.69
UPF3B-201ENST00000276201 IGKV6-21A0A0C4DH24 114 aa10.72□□□□□ -0.69
UPF3B-201ENST00000276201 GRXCR1A8MXD5 290 aa10.72□□□□□ -0.69
UPF3B-201ENST00000276201 SPAG6O75602 509 aa10.72□□□□□ -0.69
UPF3B-201ENST00000276201 BAIAP3O94812 1187 aa10.72□□□□□ -0.69
UPF3B-201ENST00000276201 VTNP04004 478 aa10.72□□□□□ -0.69
UPF3B-201ENST00000276201 GARTP22102 1010 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms