RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 HIST1H2AGP0C0S8 130 aaPredicted RBP17.25■□□□□ 0.35
PHRF1-201ENST00000264555 STMN1P16949 149 aa17.25■□□□□ 0.35
PHRF1-201ENST00000264555 HIST1H2ADP20671 130 aa17.25■□□□□ 0.35
PHRF1-201ENST00000264555 INPP5AQ14642 412 aa17.25■□□□□ 0.35
PHRF1-201ENST00000264555 CCDC126Q96EE4 140 aa17.25■□□□□ 0.35
PHRF1-201ENST00000264555 HIST1H2AHQ96KK5 128 aa17.25■□□□□ 0.35
PHRF1-201ENST00000264555 HIST1H2AJQ99878 128 aa17.25■□□□□ 0.35
PHRF1-201ENST00000264555 H2AFJQ9BTM1 129 aa17.25■□□□□ 0.35
PHRF1-201ENST00000264555 C2CD2Q9Y426 696 aa17.25■□□□□ 0.35
PHRF1-201ENST00000264555 RIPK3Q9Y572 518 aa17.25■□□□□ 0.35
PHRF1-201ENST00000264555 TTC36A6NLP5 189 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 HOXA2O43364 376 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 UBOX5O94941 541 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 HDAC4P56524 1084 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 JAM2P57087 298 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 BMPR2Q13873 1038 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 NBPF20Q3BBV1 942 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.24■□□□□ 0.35
PHRF1-201ENST00000264555 A0A0B4J269 797 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 BGNP21810 368 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 CCR1P32246 355 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 RPL10AP62906 217 aaKnown RBP17.24■□□□□ 0.35
PHRF1-201ENST00000264555 ZNF177Q13360 481 aaPredicted RBP17.24■□□□□ 0.35
PHRF1-201ENST00000264555 HASPINQ8TF76 798 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 ING2Q9H160 280 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 BATF3Q9NR55 127 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 ZMYM2Q9UBW7 1377 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 SRRM3A6NNA2 597 aaPredicted RBP17.24■□□□□ 0.35
PHRF1-201ENST00000264555 RHOBTB1O94844 696 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 NUDT17P0C025 328 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 ZSCAN5DPP0CG00 497 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 RGS4P49798 205 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 MPP3Q13368 585 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 PKN2Q16513 984 aaKnown RBP17.24■□□□□ 0.35
PHRF1-201ENST00000264555 POLNQ7Z5Q5 900 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 KIAA0319LQ8IZA0 1049 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 ALG3Q92685 438 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 APOL2Q9BQE5 337 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 RUVBL2Q9Y230 463 aaKnown RBP17.24■□□□□ 0.35
PHRF1-201ENST00000264555 ZNF197O14709 1029 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 AP1ARQ63HQ0 302 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 APTXQ7Z2E3 356 aaKnown RBP17.24■□□□□ 0.35
PHRF1-201ENST00000264555 EFL1Q7Z2Z2 1120 aaKnown RBP17.24■□□□□ 0.35
PHRF1-201ENST00000264555 MTDHQ86UE4 582 aaKnown RBP17.24■□□□□ 0.35
PHRF1-201ENST00000264555 TCP10LQ8TDR4 215 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 PCDHB18PQ96TA0 734 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 CD274Q9NZQ7 290 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 TRHDEQ9UKU6 1024 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 SH3BP1Q9Y3L3 701 aa17.24■□□□□ 0.35
PHRF1-201ENST00000264555 RALBP11234 206 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 CCDC130P13994 396 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 FSCN1Q16658 493 aaKnown RBP17.23■□□□□ 0.35
PHRF1-201ENST00000264555 KCNT2Q6UVM3 1135 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 ALLCQ8N6M5 410 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 DNAJC9Q8WXX5 260 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 EDEM1Q92611 657 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 LRRC39Q96DD0 335 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 OLFM3Q96PB7 478 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 PRDM5Q9NQX1 630 aaPredicted RBP17.23■□□□□ 0.35
PHRF1-201ENST00000264555 TMEM247A6NEH6 219 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 AQP5P55064 265 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 PTRHD1Q6GMV3 140 aaKnown RBP17.23■□□□□ 0.35
PHRF1-201ENST00000264555 TMEM86AQ8N2M4 240 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 CLEC4DQ8WXI8 215 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 SGF29Q96ES7 293 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 APOPT1Q96IL0 206 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 TMEM120AQ9BXJ8 343 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 GPR63Q9BZJ6 419 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 ARFGEF2Q9Y6D5 1785 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 DUOX1Q9NRD9 1551 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 CNTNAP2Q9UHC6 1331 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 TRDMT1O14717 391 aaKnown RBP17.23■□□□□ 0.35
PHRF1-201ENST00000264555 DAB2IPQ5VWQ8 1189 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 BLOC1S5Q8TDH9 187 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 POPDC2Q9HBU9 364 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 ARHGAP26Q9UNA1 814 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 PKP3Q9Y446 797 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 COL1A1P02452 1464 aaPredicted RBP17.23■□□□□ 0.35
PHRF1-201ENST00000264555 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.23■□□□□ 0.35
PHRF1-201ENST00000264555 POMCP01189 267 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 SHBGP04278 402 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 CPA3P15088 417 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 PGAM1P18669 254 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 CALB2P22676 271 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 RBL1P28749 1068 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 TREML2Q5T2D2 321 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 SUGP1Q8IWZ8 645 aaKnown RBP17.23■□□□□ 0.35
PHRF1-201ENST00000264555 FAR2Q96K12 515 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 FICDQ9BVA6 458 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 LATS2Q9NRM7 1088 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 COL20A1Q9P218 1284 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 KANSL3Q9P2N6 904 aa17.23■□□□□ 0.35
PHRF1-201ENST00000264555 SRP72O76094 671 aaKnown RBP17.22■□□□□ 0.35
PHRF1-201ENST00000264555 CNGA3Q16281 694 aa17.22■□□□□ 0.35
PHRF1-201ENST00000264555 ATP13A4Q4VNC1 1196 aa17.22■□□□□ 0.35
PHRF1-201ENST00000264555 CAPRIN2Q6IMN6 1127 aaKnown RBP17.22■□□□□ 0.35
PHRF1-201ENST00000264555 ZNF280DQ6N043 979 aa17.22■□□□□ 0.35
PHRF1-201ENST00000264555 YY1AP1Q9H869 796 aa17.22■□□□□ 0.35
PHRF1-201ENST00000264555 TRPV2Q9Y5S1 764 aa17.22■□□□□ 0.35
PHRF1-201ENST00000264555 C2orf81A6NN90 581 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms