RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 CCDC189A1A4V9 331 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 PPEF2O14830 753 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 MED7O43513 233 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 PSMG1O95456 288 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 ATP6V1C1P21283 382 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 GPD2P43304 727 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 SLC25A3Q00325 362 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 PMF1Q6P1K2 205 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 ZPBP2Q6X784 338 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 UNC5AQ6ZN44 842 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 MOB2Q70IA6 237 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 SLC26A11Q86WA9 606 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 NIPA2Q8N8Q9 360 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 PCDH19Q8TAB3 1148 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 SKA1Q96BD8 255 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 ZNF518BQ9C0D4 1074 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 PLAC1Q9HBJ0 212 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 USP29Q9HBJ7 922 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 PCDHGC3Q9UN70 934 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 TTLL3Q9Y4R7 772 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 ZBTB42B2RXF5 422 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 ABLIM1O14639 778 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 ITM2AO43736 263 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 PDE5AO76074 875 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 LCP1P13796 627 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 TAP1Q03518 808 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 KCNJ11Q14654 390 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 GOLGA7BQ2TAP0 167 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 PPM1JQ5JR12 505 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 WASHC2DQ5SRD0 308 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 DCAF15Q66K64 600 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 LRRC74BQ6ZQY2 392 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 SESTD1Q86VW0 696 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 SPNS2Q8IVW8 549 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.47□□□□□ -0.89
MSH4-201ENST00000263187 SMC1BQ8NDV3 1235 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 CMASQ8NFW8 434 aaPredicted RBP9.47□□□□□ -0.89
MSH4-201ENST00000263187 DEPDC1BQ8WUY9 529 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 SYT17Q9BSW7 474 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 RSAD1Q9HA92 442 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 ETNK2Q9NVF9 386 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 ZNF358Q9NW07 568 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 STOML1Q9UBI4 398 aa9.47□□□□□ -0.89
MSH4-201ENST00000263187 WDR27A2RRH5 827 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 E7ESA3 106 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 NFKBIEO00221 500 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 KRT37O76014 449 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 WFS1O76024 890 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 SNRPAP09012 282 aaKnown RBP9.46□□□□□ -0.89
MSH4-201ENST00000263187 IL4RP24394 825 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 ADORA2BP29275 332 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 EFNA5P52803 228 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 ATXN3P54252 364 aaPredicted RBP9.46□□□□□ -0.89
MSH4-201ENST00000263187 NOMO1Q15155 1222 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 Q3C1V9 767 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 CCDC14Q49A88 953 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 PPP1R26Q5T8A7 1209 aaPredicted RBP9.46□□□□□ -0.89
MSH4-201ENST00000263187 TTC39BQ5VTQ0 682 aaPredicted RBP9.46□□□□□ -0.89
MSH4-201ENST00000263187 PQLC3Q8N755 202 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 PYDC1Q8WXC3 89 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 CLMNQ96JQ2 1002 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 RNF157Q96PX1 679 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 LGMNQ99538 433 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 PIM2Q9P1W9 311 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 MTO1Q9Y2Z2 717 aaKnown RBP9.46□□□□□ -0.89
MSH4-201ENST00000263187 SNX9Q9Y5X1 595 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 BPTFQ12830 3046 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 COL11A1P12107 1806 aaPredicted RBP9.46□□□□□ -0.89
MSH4-201ENST00000263187 LAMA3Q16787 3333 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 WDR81Q562E7 1941 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 APOL1O14791 398 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 USP12O75317 370 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 LUC7L3O95232 432 aaKnown RBP9.46□□□□□ -0.89
MSH4-201ENST00000263187 VHLP40337 213 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 POLE2P56282 527 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 KLC1Q07866 573 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 SLC10A2Q12908 348 aaPredicted RBP9.46□□□□□ -0.89
MSH4-201ENST00000263187 RALGPS1Q5JS13 557 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 C1orf146Q5VVC0 180 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 IER5Q5VY09 327 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 CYP4V2Q6ZWL3 525 aaPredicted RBP9.46□□□□□ -0.89
MSH4-201ENST00000263187 CCNJLQ8IV13 435 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 GSTCDQ8NEC7 633 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 ZNF333Q96JL9 665 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 SNRNP25Q9BV90 132 aaKnown RBP9.46□□□□□ -0.89
MSH4-201ENST00000263187 MAN1C1Q9NR34 630 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 ARHGEF4Q9NR80 690 aa9.46□□□□□ -0.89
MSH4-201ENST00000263187 CILPO75339 1184 aa9.46□□□□□ -0.9
MSH4-201ENST00000263187 RFPL1O75677 317 aa9.46□□□□□ -0.9
MSH4-201ENST00000263187 C6orf222P0C671 652 aaPredicted RBP9.46□□□□□ -0.9
MSH4-201ENST00000263187 SAT1P21673 171 aa9.46□□□□□ -0.9
MSH4-201ENST00000263187 ZNF143P52747 638 aaPredicted RBP9.46□□□□□ -0.9
MSH4-201ENST00000263187 RIPOR1Q6ZS17 1223 aa9.46□□□□□ -0.9
MSH4-201ENST00000263187 TP53INP2Q8IXH6 220 aa9.46□□□□□ -0.9
MSH4-201ENST00000263187 PGBD4Q96DM1 585 aa9.46□□□□□ -0.9
MSH4-201ENST00000263187 OTUD5Q96G74 571 aa9.46□□□□□ -0.9
MSH4-201ENST00000263187 AGAP3Q96P47 875 aa9.46□□□□□ -0.9
MSH4-201ENST00000263187 POPDC2Q9HBU9 364 aa9.46□□□□□ -0.9
MSH4-201ENST00000263187 SAR1AQ9NR31 198 aa9.46□□□□□ -0.9
MSH4-201ENST00000263187 CORO1CQ9ULV4 474 aaPredicted RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms