RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 PKP2Q99959 881 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 ZFYVE28Q9HCC9 887 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 STRIP2Q9ULQ0 834 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.15■□□□□ 0.02
PTPRA-201ENST00000216877 DENRO43583 198 aaKnown RBP15.15■□□□□ 0.02
PTPRA-201ENST00000216877 UFL1O94874 794 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 KCNH1O95259 989 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 NSFP46459 744 aaKnown RBP15.15■□□□□ 0.02
PTPRA-201ENST00000216877 MSS51Q4VC12 460 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 FNBP1LQ5T0N5 605 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 TMEM26Q6ZUK4 368 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 CATSPER1Q8NEC5 780 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 CALML6Q8TD86 181 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 SERPINI1Q99574 410 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 NYXQ9GZU5 481 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 ZNF696Q9H7X3 374 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 ZNF646O15015 1829 aaPredicted RBP15.15■□□□□ 0.02
PTPRA-201ENST00000216877 SLC16A3O15427 465 aaKnown RBP15.15■□□□□ 0.02
PTPRA-201ENST00000216877 TGFB1I1O43294 461 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 ACADVLP49748 655 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 TAS2R40P59535 323 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 EFHC2Q5JST6 749 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 TAS2R42Q7RTR8 314 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 FAM84AQ96KN4 292 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 CCDC106Q9BWC9 280 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 GPR88Q9GZN0 384 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 RNF38Q9H0F5 515 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 CXorf21Q9HAI6 301 aa15.15■□□□□ 0.02
PTPRA-201ENST00000216877 WARS2Q9UGM6 360 aaKnown RBP15.15■□□□□ 0.02
PTPRA-201ENST00000216877 FBXO9Q9UK97 447 aaPredicted RBP15.15■□□□□ 0.02
PTPRA-201ENST00000216877 SCN7AQ01118 1682 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 KRT37O76014 449 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 ZNF23P17027 643 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 MXI1P50539 228 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 BMXP51813 675 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 SLC18A1P54219 525 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 PPP2R5DQ14738 602 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 TIGD2Q4W5G0 525 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 PARP10Q53GL7 1025 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 NIPAL1Q6NVV3 410 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 RHOT1Q8IXI2 618 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 MKL1Q969V6 931 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 C6orf203Q9P0P8 240 aaPredicted RBP15.14■□□□□ 0.01
PTPRA-201ENST00000216877 CROCCQ5TZA2 2017 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 SPEF2Q9C093 1822 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 KRBA1A5PL33 1030 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 TPST1O60507 370 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 MYO1DO94832 1006 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 ATE1O95260 518 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 H6PDO95479 791 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 ART3Q13508 389 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 DLGAP5Q15398 846 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 FAAH2Q6GMR7 532 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 SIX6OS1Q8N1H7 587 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 MARCH7Q9H992 704 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 POLR1BQ9H9Y6 1135 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 WDR70Q9NW82 654 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 XPO7Q9UIA9 1087 aaKnown RBP15.14■□□□□ 0.01
PTPRA-201ENST00000216877 GTPBP10A4D1E9 387 aaKnown RBP15.14■□□□□ 0.01
PTPRA-201ENST00000216877 FDX1P10109 184 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 ELK3P41970 407 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 DNASE1L3Q13609 305 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 OGFRL1Q5TC84 451 aaPredicted RBP15.14■□□□□ 0.01
PTPRA-201ENST00000216877 KCTD1Q719H9 257 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 GET4Q7L5D6 327 aaPredicted RBP15.14■□□□□ 0.01
PTPRA-201ENST00000216877 ALLCQ8N6M5 410 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 PGBD4Q96DM1 585 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 CIB1Q99828 191 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 C20orf96Q9NUD7 363 aaPredicted RBP15.14■□□□□ 0.01
PTPRA-201ENST00000216877 IGSF9Q9P2J2 1179 aa15.14■□□□□ 0.01
PTPRA-201ENST00000216877 CLUHO75153 1309 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 NRLP54845 237 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 NFX1Q12986 1120 aaKnown RBP15.13■□□□□ 0.01
PTPRA-201ENST00000216877 EML3Q32P44 896 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 CLIP4Q8N3C7 705 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 PHTF2Q8N3S3 785 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 SLC15A4Q8N697 577 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 SH3GL1Q99961 368 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 PNPOQ9NVS9 261 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 SCHIP1Q9P0W5 487 aaPredicted RBP15.13■□□□□ 0.01
PTPRA-201ENST00000216877 TXNDC16Q9P2K2 825 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 FAM47E-STBD1D6RA91 191 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 ALDH2P05091 517 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 PTPN1P18031 435 aaKnown RBP15.13■□□□□ 0.01
PTPRA-201ENST00000216877 ITGAXP20702 1163 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 HIBADHP31937 336 aaKnown RBP15.13■□□□□ 0.01
PTPRA-201ENST00000216877 CPOXP36551 454 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 RALGDSQ12967 914 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 ADGRD1Q6QNK2 874 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 CHST15Q7LFX5 561 aaPredicted RBP15.13■□□□□ 0.01
PTPRA-201ENST00000216877 ADAM32Q8TC27 787 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 MAELQ96JY0 434 aaKnown RBP15.13■□□□□ 0.01
PTPRA-201ENST00000216877 MTG1Q9BT17 334 aaPredicted RBP15.13■□□□□ 0.01
PTPRA-201ENST00000216877 FOXP3Q9BZS1 431 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 COQ10BQ9H8M1 238 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 TAF4O00268 1085 aa15.13■□□□□ 0.01
PTPRA-201ENST00000216877 KPNA4O00629 521 aaPredicted RBP15.13■□□□□ 0.01
PTPRA-201ENST00000216877 CCNT2O60583 730 aaKnown RBP15.13■□□□□ 0.01
PTPRA-201ENST00000216877 XRCC1P18887 633 aaPredicted RBP15.13■□□□□ 0.01
PTPRA-201ENST00000216877 SLC12A3P55017 1021 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms