RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 LPCAT4Q643R3 524 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 MAP1SQ66K74 1059 aaPredicted RBP14.55□□□□□ -0.08
USH1C-201ENST00000005226 ATG16L1Q676U5 607 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 ARHGAP24Q8N264 748 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 GALNT15Q8N3T1 639 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 PQLC3Q8N755 202 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 PPP1R14CQ8TAE6 165 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 FNIP1Q8TF40 1166 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 ZBED3Q96IU2 234 aaPredicted RBP14.55□□□□□ -0.08
USH1C-201ENST00000005226 C7orf26Q96N11 449 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 ECSITQ9BQ95 431 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 NIFKQ9BYG3 293 aaKnown RBP14.55□□□□□ -0.08
USH1C-201ENST00000005226 FRMD8P1Q9BZ68 369 aaPredicted RBP14.55□□□□□ -0.08
USH1C-201ENST00000005226 LHX5Q9H2C1 402 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 DNAJC5Q9H3Z4 198 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 EBF3Q9H4W6 596 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 ETNK2Q9NVF9 386 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 IL1RAPL1Q9NZN1 696 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 SIRPGQ9P1W8 387 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 ANGPTL2Q9UKU9 493 aa14.55□□□□□ -0.08
USH1C-201ENST00000005226 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.54□□□□□ -0.08
USH1C-201ENST00000005226 INO80B-WBP1J3KQ70 363 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 ZMPSTE24O75844 475 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 ZBED1O96006 694 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 ITGB3P05106 788 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 BPGMP07738 259 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 UBA1P22314 1058 aaKnown RBP14.54□□□□□ -0.08
USH1C-201ENST00000005226 CALRP27797 417 aaKnown RBP14.54□□□□□ -0.08
USH1C-201ENST00000005226 ACTR3P61158 418 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 PTPN11Q06124 597 aaPredicted RBP14.54□□□□□ -0.08
USH1C-201ENST00000005226 TARBP2Q15633 366 aaKnown RBP14.54□□□□□ -0.08
USH1C-201ENST00000005226 STXBP2Q15833 593 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 VWA5B1Q5TIE3 1220 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 ZPBP2Q6X784 338 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 RNF111Q6ZNA4 994 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 NET1Q7Z628 596 aaPredicted RBP14.54□□□□□ -0.08
USH1C-201ENST00000005226 C12orf29Q8N999 325 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 PCDH19Q8TAB3 1148 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 CCDC124Q96CT7 223 aaKnown RBP14.54□□□□□ -0.08
USH1C-201ENST00000005226 PGLYRP2Q96PD5 576 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 GBP5Q96PP8 586 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 INO80BQ9C086 356 aaPredicted RBP14.54□□□□□ -0.08
USH1C-201ENST00000005226 WWP1Q9H0M0 922 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 CYP4F11Q9HBI6 524 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 ASNSD1Q9NWL6 643 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 NDE1Q9NXR1 346 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 KCNG1Q9UIX4 513 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 A0A088AWK7 358 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 CHADO15335 359 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 RNASEH1O60930 286 aaKnown RBP14.54□□□□□ -0.08
USH1C-201ENST00000005226 APOEP02649 317 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 TSHRP16473 764 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 CYP3A5P20815 502 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 ABCD1P33897 745 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 GPD2P43304 727 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 BCAR1P56945 870 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 CDC16Q13042 620 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 FAM183BPQ6ZVS7 135 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 C1orf127Q8N9H9 656 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 STKLD1Q8NE28 680 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 JDP2Q8WYK2 163 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 MCRS1Q96EZ8 462 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 TRIM4Q9C037 500 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 ACAD9Q9H845 621 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 NRBP2Q9NSY0 501 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 PACSIN3Q9UKS6 424 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 DNAJC16Q9Y2G8 782 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 PPME1Q9Y570 386 aa14.54□□□□□ -0.08
USH1C-201ENST00000005226 LOC100653049A0A140TA62 436 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 MED7O43513 233 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 PRPSAP2O60256 369 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 KRT34O76011 436 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 ETS2P15036 469 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 TFE3P19532 575 aaPredicted RBP14.53□□□□□ -0.08
USH1C-201ENST00000005226 GPD1P21695 349 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 TCF7P36402 384 aaPredicted RBP14.53□□□□□ -0.08
USH1C-201ENST00000005226 AP3M2P53677 418 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 ROR2Q01974 943 aaKnown RBP14.53□□□□□ -0.08
USH1C-201ENST00000005226 LY6KQ17RY6 165 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 FASTKD1Q53R41 847 aaKnown RBP14.53□□□□□ -0.08
USH1C-201ENST00000005226 NIM1KQ8IY84 436 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 ANKRD36BP1Q96IX9 119 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 PNPLA8Q9NP80 782 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 PAK5Q9P286 719 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 PRKCHP24723 683 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 ZNF143P52747 638 aaPredicted RBP14.53□□□□□ -0.08
USH1C-201ENST00000005226 ATXN1P54253 815 aaKnown RBP14.53□□□□□ -0.08
USH1C-201ENST00000005226 PRKG1Q13976 671 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 RBBP5Q15291 538 aaKnown RBP14.53□□□□□ -0.08
USH1C-201ENST00000005226 FLAD1Q8NFF5 587 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 MINDY3Q9H8M7 445 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 PNPOQ9NVS9 261 aa14.53□□□□□ -0.08
USH1C-201ENST00000005226 FER1L6Q2WGJ9 1857 aa14.52□□□□□ -0.08
USH1C-201ENST00000005226 COL11A1P12107 1806 aaPredicted RBP14.52□□□□□ -0.08
USH1C-201ENST00000005226 SNNO75324 88 aaPredicted RBP14.52□□□□□ -0.08
USH1C-201ENST00000005226 MAFO75444 373 aaPredicted RBP14.52□□□□□ -0.08
USH1C-201ENST00000005226 ENDOD1O94919 500 aa14.52□□□□□ -0.08
USH1C-201ENST00000005226 CD1EP15812 388 aa14.52□□□□□ -0.08
USH1C-201ENST00000005226 CPOXP36551 454 aa14.52□□□□□ -0.08
USH1C-201ENST00000005226 AP2B1P63010 937 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 171.2 ms