RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ATG13O75143 517 aa20.24■□□□□ 0.83
CLN3-260ENST00000637578 EIF2DP41214 584 aaKnown RBP20.24■□□□□ 0.83
CLN3-260ENST00000637578 BCAT1P54687 386 aa20.24■□□□□ 0.83
CLN3-260ENST00000637578 SLC8A3P57103 927 aa20.24■□□□□ 0.83
CLN3-260ENST00000637578 PDE4CQ08493 712 aa20.24■□□□□ 0.83
CLN3-260ENST00000637578 GOLGA7BQ2TAP0 167 aa20.24■□□□□ 0.83
CLN3-260ENST00000637578 PM20D1Q6GTS8 502 aa20.24■□□□□ 0.83
CLN3-260ENST00000637578 TMEM270Q6UE05 265 aa20.24■□□□□ 0.83
CLN3-260ENST00000637578 TFAP2BQ92481 460 aa20.24■□□□□ 0.83
CLN3-260ENST00000637578 NACA2Q9H009 215 aa20.24■□□□□ 0.83
CLN3-260ENST00000637578 CNTN6Q9UQ52 1028 aa20.24■□□□□ 0.83
CLN3-260ENST00000637578 A0A0A0MRY4 1105 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 TULP2O00295 520 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 RNF40O75150 1001 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 CD19P15391 556 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 BST2Q10589 180 aaKnown RBP20.23■□□□□ 0.83
CLN3-260ENST00000637578 LCLAT1Q6UWP7 414 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 ARHGEF19Q8IW93 802 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 BBS7Q8IWZ6 715 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 CNOT6LQ96LI5 555 aaKnown RBP20.23■□□□□ 0.83
CLN3-260ENST00000637578 ZSWIM1Q9BR11 485 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 NAT10Q9H0A0 1025 aaKnown RBP20.23■□□□□ 0.83
CLN3-260ENST00000637578 THAP9Q9H5L6 903 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 DNMT3LQ9UJW3 386 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 NAGPAQ9UK23 515 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 NFE2L3Q9Y4A8 694 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 PCDHB4Q9Y5E5 795 aa20.23■□□□□ 0.83
CLN3-260ENST00000637578 ADH1CP00326 375 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 PLA2G4AP47712 749 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 TKTL1P51854 596 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 ZNF132P52740 706 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 MYL5Q02045 173 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 DMWDQ09019 674 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 LY6G5CQ5SRR4 150 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 RRAGAQ7L523 313 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 TADA2BQ86TJ2 420 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 KCTD13Q8WZ19 329 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 KREMEN1Q96MU8 473 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 CDK5RAP1Q96SZ6 601 aaKnown RBP20.22■□□□□ 0.83
CLN3-260ENST00000637578 INTS2Q9H0H0 1204 aaKnown RBP20.22■□□□□ 0.83
CLN3-260ENST00000637578 HESX1Q9UBX0 185 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 CFAP54Q96N23 3096 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 GPR179Q6PRD1 2367 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 OTOGLQ3ZCN5 2332 aa20.22■□□□□ 0.83
CLN3-260ENST00000637578 K7EQS6 105 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 ZBED1O96006 694 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 RALAP11233 206 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 CNGA2Q16280 664 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 HSP90AA4PQ58FG1 418 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 C10orf120Q5SQS8 335 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 BHLHA9Q7RTU4 235 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 SCML4Q8N228 414 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 ARHGAP18Q8N392 663 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 AOPEPQ8N6M6 819 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 CCDC26Q8TAB7 109 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 SLC35F5Q8WV83 523 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 SAMSN1Q9NSI8 373 aaKnown RBP20.21■□□□□ 0.83
CLN3-260ENST00000637578 NUDT5Q9UKK9 219 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 EP300Q09472 2414 aaPredicted RBP20.21■□□□□ 0.83
CLN3-260ENST00000637578 GVINP1Q7Z2Y8 2422 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 MYO16Q9Y6X6 1858 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 HOXC11O43248 304 aaPredicted RBP20.21■□□□□ 0.83
CLN3-260ENST00000637578 SETSIPP0DME0 302 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 CHRM1P11229 460 aaPredicted RBP20.21■□□□□ 0.83
CLN3-260ENST00000637578 ADH5P11766 374 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 HOXC13P31276 330 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 SLC6A11P48066 632 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 ZNF165P49910 485 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 GAD2Q05329 585 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 STILQ15468 1287 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 Q6ZNB5 142 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 LONP2Q86WA8 852 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 C12orf40Q86WS4 652 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 ETFBKMTQ8IXQ9 262 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 PHTF2Q8N3S3 785 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 UBA3Q8TBC4 463 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 BPIFA3Q9BQP9 254 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 SPHK2Q9NRA0 654 aa20.21■□□□□ 0.83
CLN3-260ENST00000637578 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.21■□□□□ 0.83
CLN3-260ENST00000637578 CCDC163A0A0D9SF12 145 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 MDM4O15151 490 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 GABBR2O75899 941 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 IRF1P10914 325 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 CNR2P34972 360 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 FNTBP49356 437 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 GOLGA8FQ08AF8 430 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 GOLGA8DPQ0D2H9 430 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 MESP2Q0VG99 397 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 NCAPHQ15003 741 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 SYT13Q7L8C5 426 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 TMEM25Q86YD3 366 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 CREBRFQ8IUR6 639 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 RBBP8NLQ8NC74 664 aaPredicted RBP20.2■□□□□ 0.82
CLN3-260ENST00000637578 RPLP0P6Q8NHW5 317 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 RUBCNQ92622 972 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 PNKPQ96T60 521 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 ULBP1Q9BZM6 244 aa20.2■□□□□ 0.82
CLN3-260ENST00000637578 GTPBP10A4D1E9 387 aaKnown RBP20.19■□□□□ 0.82
CLN3-260ENST00000637578 HRO43593 1189 aa20.19■□□□□ 0.82
CLN3-260ENST00000637578 YWHAGP61981 247 aaKnown RBP eCLIP20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms