RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CEP290O15078 2479 aa21■□□□□ 0.95
CLN3-250ENST00000636839 NOS2P35228 1153 aa21■□□□□ 0.95
CLN3-250ENST00000636839 SLC7A5Q01650 507 aa21■□□□□ 0.95
CLN3-250ENST00000636839 NME3Q13232 169 aa21■□□□□ 0.95
CLN3-250ENST00000636839 CA9Q16790 459 aa21■□□□□ 0.95
CLN3-250ENST00000636839 HADHQ16836 314 aaKnown RBP21■□□□□ 0.95
CLN3-250ENST00000636839 SLC25A52Q3SY17 297 aa21■□□□□ 0.95
CLN3-250ENST00000636839 ZC3H12AQ5D1E8 599 aaKnown RBP21■□□□□ 0.95
CLN3-250ENST00000636839 KAZNQ674X7 775 aa21■□□□□ 0.95
CLN3-250ENST00000636839 CCDC185Q8N715 623 aa21■□□□□ 0.95
CLN3-250ENST00000636839 SPPL2BQ8TCT7 592 aa21■□□□□ 0.95
CLN3-250ENST00000636839 NT5C3BQ969T7 300 aa21■□□□□ 0.95
CLN3-250ENST00000636839 FAM118BQ9BPY3 351 aa21■□□□□ 0.95
CLN3-250ENST00000636839 ALG13Q9NP73 1137 aaKnown RBP21■□□□□ 0.95
CLN3-250ENST00000636839 OSER1Q9NX31 292 aa21■□□□□ 0.95
CLN3-250ENST00000636839 CDH23Q9H251 3354 aa21■□□□□ 0.95
CLN3-250ENST00000636839 CHD9Q3L8U1 2897 aa21■□□□□ 0.95
CLN3-250ENST00000636839 M0QYT0 321 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 CAPN9O14815 690 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 TRIM66O15016 1216 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 PRPSAP2O60256 369 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 ATF6P18850 670 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 ITIH3Q06033 890 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 RASIP1Q5U651 963 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 POLNQ7Z5Q5 900 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 FAM131BQ86XD5 332 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 RCOR2Q8IZ40 523 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 NUP93Q8N1F7 819 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 MMGT1Q8N4V1 131 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 PRELID2Q8N945 189 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 SLC7A14Q8TBB6 771 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 SP7Q8TDD2 431 aaPredicted RBP20.99■□□□□ 0.95
CLN3-250ENST00000636839 RPGRIP1Q96KN7 1286 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 PNKPQ96T60 521 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 AAASQ9NRG9 546 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 MTUS1Q9ULD2 1270 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 ZMYND10O75800 440 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 URODP06132 367 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 GLI1P08151 1106 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 CA8P35219 290 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 MAGEA10P43363 369 aaPredicted RBP20.99■□□□□ 0.95
CLN3-250ENST00000636839 SPOCD1Q6ZMY3 1216 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 UBE2Q2Q8WVN8 375 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 C17orf80Q9BSJ5 609 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 OSBPL8Q9BZF1 889 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 PIGVQ9NUD9 493 aa20.99■□□□□ 0.95
CLN3-250ENST00000636839 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.99■□□□□ 0.95
CLN3-250ENST00000636839 R3HDM2Q9Y2K5 976 aaKnown RBP20.99■□□□□ 0.95
CLN3-250ENST00000636839 A0A1W2PQH9 124 aa20.98■□□□□ 0.95
CLN3-250ENST00000636839 FSCN2O14926 492 aa20.98■□□□□ 0.95
CLN3-250ENST00000636839 KRT7P08729 469 aa20.98■□□□□ 0.95
CLN3-250ENST00000636839 SPATA31D3P0C874 917 aa20.98■□□□□ 0.95
CLN3-250ENST00000636839 KDELR1P24390 212 aa20.98■□□□□ 0.95
CLN3-250ENST00000636839 PPM1AP35813 382 aa20.98■□□□□ 0.95
CLN3-250ENST00000636839 MMRN1Q13201 1228 aa20.98■□□□□ 0.95
CLN3-250ENST00000636839 SHHQ15465 462 aa20.98■□□□□ 0.95
CLN3-250ENST00000636839 SPATA31D4Q6ZUB0 917 aa20.98■□□□□ 0.95
CLN3-250ENST00000636839 KCTD6Q8NC69 237 aa20.98■□□□□ 0.95
CLN3-250ENST00000636839 CMASQ8NFW8 434 aaPredicted RBP20.98■□□□□ 0.95
CLN3-250ENST00000636839 PHOSPHO2Q8TCD6 241 aa20.98■□□□□ 0.95
CLN3-250ENST00000636839 PATJQ8NI35 1801 aa20.98■□□□□ 0.95
CLN3-250ENST00000636839 TEX28O15482 410 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 LILRB3O75022 631 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 ABLIM3O94929 683 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 CDKN2BP42772 138 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 YWHAGP61981 247 aaKnown RBP eCLIP20.97■□□□□ 0.95
CLN3-250ENST00000636839 KRT17Q04695 432 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 BNIPLQ7Z465 357 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 ZNF461Q8TAF7 563 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 C1orf54Q8WWF1 131 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 ATG4AQ8WYN0 398 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 IRGQQ8WZA9 623 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 SNRNP25Q9BV90 132 aaKnown RBP20.97■□□□□ 0.95
CLN3-250ENST00000636839 OXCT2Q9BYC2 517 aaPredicted RBP20.97■□□□□ 0.95
CLN3-250ENST00000636839 ANLNQ9NQW6 1124 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 MRPL17Q9NRX2 175 aaKnown RBP20.97■□□□□ 0.95
CLN3-250ENST00000636839 DDX56Q9NY93 547 aaKnown RBP20.97■□□□□ 0.95
CLN3-250ENST00000636839 GMIPQ9P107 970 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 LINC01553A4QN01 128 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 SART1O43290 800 aaKnown RBP20.97■□□□□ 0.95
CLN3-250ENST00000636839 DNAJB1P25685 340 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 DENND5BQ6ZUT9 1274 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 ZBP1Q9H171 429 aa20.97■□□□□ 0.95
CLN3-250ENST00000636839 DMGDHQ9UI17 866 aaKnown RBP20.97■□□□□ 0.95
CLN3-250ENST00000636839 I6L893 689 aaPredicted RBP20.96■□□□□ 0.95
CLN3-250ENST00000636839 CTNNB1P35222 781 aa20.96■□□□□ 0.95
CLN3-250ENST00000636839 BMPR1AP36894 532 aa20.96■□□□□ 0.95
CLN3-250ENST00000636839 ERVFC1P60507 584 aa20.96■□□□□ 0.95
CLN3-250ENST00000636839 KLF1Q13351 362 aaPredicted RBP20.96■□□□□ 0.95
CLN3-250ENST00000636839 TTC27Q6P3X3 843 aa20.96■□□□□ 0.95
CLN3-250ENST00000636839 SCML4Q8N228 414 aa20.96■□□□□ 0.95
CLN3-250ENST00000636839 PYROXD2Q8N2H3 581 aa20.96■□□□□ 0.95
CLN3-250ENST00000636839 PARD6BQ9BYG5 372 aa20.96■□□□□ 0.95
CLN3-250ENST00000636839 CYP4F11Q9HBI6 524 aa20.96■□□□□ 0.95
CLN3-250ENST00000636839 AMACRQ9UHK6 382 aa20.96■□□□□ 0.95
CLN3-250ENST00000636839 hCG_1818297A0A087WSY0 165 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 CNPP09543 421 aaKnown RBP20.95■□□□□ 0.94
CLN3-250ENST00000636839 ARSEP51690 589 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 CDH6P55285 790 aa20.95■□□□□ 0.94
CLN3-250ENST00000636839 SMARCB1Q12824 385 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms