RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 KRT72Q14CN4 511 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 TMEM110Q86TL2 294 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 CPB2Q96IY4 423 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 MIPEPQ99797 713 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 KLC2Q9H0B6 622 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 ALG13Q9NP73 1137 aaKnown RBP13.27□□□□□ -0.29
LINC00540-203ENST00000631321 ETNK2Q9NVF9 386 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 DPP3Q9NY33 737 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 HEY2Q9UBP5 337 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 CSDE1O75534 798 aaKnown RBP13.27□□□□□ -0.29
LINC00540-203ENST00000631321 HAUS5O94927 633 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 ZBED1O96006 694 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 SNRPAP09012 282 aaKnown RBP13.27□□□□□ -0.29
LINC00540-203ENST00000631321 BGNP21810 368 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 RBL1P28749 1068 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 GOLGA7BQ2TAP0 167 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 Q3C1V9 767 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.27□□□□□ -0.29
LINC00540-203ENST00000631321 MIEF2Q96C03 454 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 CFAP36Q96G28 342 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 SRPK1Q96SB4 655 aaKnown RBP13.27□□□□□ -0.29
LINC00540-203ENST00000631321 ZC3H7BQ9UGR2 993 aaKnown RBP13.27□□□□□ -0.29
LINC00540-203ENST00000631321 LRRC42Q9Y546 428 aa13.27□□□□□ -0.29
LINC00540-203ENST00000631321 A0A0G2JND7 137 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 TRIM49D1C9J1S8 452 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 CCDC22O60826 627 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 KRT37O76014 449 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 OSBPP22059 807 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 SLC6A3Q01959 620 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 ARHGAP1Q07960 439 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 CDO1Q16878 200 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 PMF1Q6P1K2 205 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 FAM172AQ8WUF8 416 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 SNRNP25Q9BV90 132 aaKnown RBP13.26□□□□□ -0.29
LINC00540-203ENST00000631321 TMEM120AQ9BXJ8 343 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 DENND2DQ9H6A0 471 aaPredicted RBP13.26□□□□□ -0.29
LINC00540-203ENST00000631321 PDGFCQ9NRA1 345 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 ARL8BQ9NVJ2 186 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 PPP1R1BQ9UD71 204 aaPredicted RBP13.26□□□□□ -0.29
LINC00540-203ENST00000631321 ZSWIM8A7E2V4 1837 aa13.26□□□□□ -0.29
LINC00540-203ENST00000631321 CXorf49A8MYA2 514 aaPredicted RBP13.25□□□□□ -0.29
LINC00540-203ENST00000631321 PIK3R2O00459 728 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 COPEO14579 308 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 GRAP2O75791 330 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 TOMM70O94826 608 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 LGALS2P05162 132 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 SDC4P31431 198 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 IGBP1P78318 339 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 CA9Q16790 459 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 CMPK2Q5EBM0 449 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 LGSNQ5TDP6 509 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 DLK2Q6UY11 383 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 CDHR3Q6ZTQ4 885 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 BZW1Q7L1Q6 419 aaKnown RBP13.25□□□□□ -0.29
LINC00540-203ENST00000631321 DPH6Q7L8W6 267 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 SESTD1Q86VW0 696 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 TTC30AQ86WT1 665 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 ERO1BQ86YB8 467 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 CDKL3Q8IVW4 592 aaPredicted RBP13.25□□□□□ -0.29
LINC00540-203ENST00000631321 TRIM42Q8IWZ5 723 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 PPM1NQ8N819 430 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 C12orf29Q8N999 325 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 TTC17Q96AE7 1141 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 NSL1Q96IY1 281 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 ACAP3Q96P50 834 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 NUDCD1Q96RS6 583 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 BTBD10Q9BSF8 475 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 CADM1Q9BY67 442 aaKnown RBP13.25□□□□□ -0.29
LINC00540-203ENST00000631321 GPATCH2LQ9NWQ4 482 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 KCNH4Q9UQ05 1017 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 PLLPQ9Y342 182 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 COL1A2P08123 1366 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 SLC15A5A6NIM6 579 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 TSPAN1O60635 241 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 GCATO75600 419 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 RFPL1O75677 317 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 LMNAP02545 664 aaKnown RBP13.25□□□□□ -0.29
LINC00540-203ENST00000631321 APOEP02649 317 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 TPSB2P20231 275 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 LAMC2Q13753 1193 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 TPSAB1Q15661 275 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 PPP1R26Q5T8A7 1209 aaPredicted RBP13.25□□□□□ -0.29
LINC00540-203ENST00000631321 C4orf50Q6ZRC1 276 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 ZDHHC17Q8IUH5 632 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 SLC35F5Q8WV83 523 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 MTBPQ96DY7 904 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 OTUD5Q96G74 571 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 C7orf26Q96N11 449 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 C11orf84Q9BUA3 381 aaPredicted RBP13.25□□□□□ -0.29
LINC00540-203ENST00000631321 MROH8Q9H579 483 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 ELP3Q9H9T3 547 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 GTF2IRD1Q9UHL9 959 aa13.25□□□□□ -0.29
LINC00540-203ENST00000631321 ASB14A6NK59 587 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 LIN7AO14910 233 aaPredicted RBP13.24□□□□□ -0.29
LINC00540-203ENST00000631321 GABBR2O75899 941 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 SERPINB3P29508 390 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 GRM5P41594 1212 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 IREB2P48200 963 aaKnown RBP13.24□□□□□ -0.29
LINC00540-203ENST00000631321 RGS7P49802 495 aa13.24□□□□□ -0.29
LINC00540-203ENST00000631321 HDAC4P56524 1084 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms