RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 UGT1A9O60656 530 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 INHBBP09529 407 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 UGT1A6P19224 532 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 UGT1A1P22309 533 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 UGT1A4P22310 534 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 PRDX6P30041 224 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 UGT1A3P35503 534 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 UGT1A5P35504 534 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 ALDH3B2P48448 385 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 KCNA1Q09470 495 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 DNAL1Q4LDG9 190 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 PRAMEF18Q5VWM3 479 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 KYAT3Q6YP21 454 aaKnown RBP10.6□□□□□ -0.71
VPS39-214ENST00000614932 ADAT2Q7Z6V5 191 aaKnown RBP10.6□□□□□ -0.71
VPS39-214ENST00000614932 NT5DC3Q86UY8 548 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 DNAAF5Q86Y56 855 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 TPH2Q8IWU9 490 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 LINC00469Q8N7U9 141 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 RFWD2Q8NHY2 731 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 ANGPTL6Q8NI99 470 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 CAPSLQ8WWF8 208 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 LENG9Q96B70 501 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 CLPTM1LQ96KA5 538 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 AIFM2Q9BRQ8 373 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 ZBED2Q9BTP6 218 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 UGT1A7Q9HAW7 530 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 UGT1A10Q9HAW8 530 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 UGT1A8Q9HAW9 530 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 PCDHGB4Q9UN71 923 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 ATP11BQ9Y2G3 1177 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 PPME1Q9Y570 386 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 PCDHGB5Q9Y5G0 923 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 ASTN2O75129 1339 aaPredicted RBP10.6□□□□□ -0.71
VPS39-214ENST00000614932 ABCB11O95342 1321 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 ZMYM2Q9UBW7 1377 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 A0A0G2JND7 137 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 H3BNX3 289 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 H3BRJ5 948 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 KCNJ13O60928 360 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 ENTPD3O75355 529 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 KRT6AP02538 564 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 KRT6BP04259 564 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 KRT13P13646 458 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 CCDC130P13994 396 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 M6PRP20645 277 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 IREB2P48200 963 aaKnown RBP10.59□□□□□ -0.71
VPS39-214ENST00000614932 YWHAGP61981 247 aaKnown RBP eCLIP10.59□□□□□ -0.71
VPS39-214ENST00000614932 CDK16Q00536 496 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 CDK18Q07002 472 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 KLHL30Q0D2K2 578 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 CLUL1Q15846 466 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 NXNQ6DKJ4 435 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 AMIGO2Q86SJ2 522 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 CADM3Q8N126 398 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 POU5F2Q8N7G0 328 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 C12orf50Q8NA57 414 aaPredicted RBP10.59□□□□□ -0.71
VPS39-214ENST00000614932 ETNPPLQ8TBG4 499 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 TMIGD2Q96BF3 282 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 SDCCAG3Q96C92 435 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 TMA16Q96EY4 203 aaKnown RBP10.59□□□□□ -0.71
VPS39-214ENST00000614932 CALN1Q9BXU9 219 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 MOV10Q9HCE1 1003 aaKnown RBP10.59□□□□□ -0.71
VPS39-214ENST00000614932 KIAA1586Q9HCI6 787 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 ARHGEF4Q9NR80 690 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 B3GNT3Q9Y2A9 372 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 SQORQ9Y6N5 450 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 MYOCOSA0A1B0GUC4 107 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 WDR91A4D1P6 747 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 GOLGA8IPA6NC78 632 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 CAPN8A6NHC0 703 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 PSMD11O00231 422 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 CLIC2O15247 247 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 SPATA31C1P0DKV0 1188 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 NAGAP17050 411 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 COL4A5P29400 1685 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 SLC18A1P54219 525 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 ATP6V0D1P61421 351 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 FRMPD4Q14CM0 1322 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 CEP78Q5JTW2 689 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 LRRC55Q6ZSA7 311 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.59□□□□□ -0.71
VPS39-214ENST00000614932 GUF1Q8N442 669 aaKnown RBP10.59□□□□□ -0.71
VPS39-214ENST00000614932 RBM15BQ8NDT2 890 aaKnown RBP10.59□□□□□ -0.71
VPS39-214ENST00000614932 TBC1D15Q8TC07 691 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 PSPC1Q8WXF1 523 aaKnown RBP10.59□□□□□ -0.71
VPS39-214ENST00000614932 ZNF75CPQ92670 426 aaPredicted RBP10.59□□□□□ -0.71
VPS39-214ENST00000614932 PGBD4Q96DM1 585 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 VMP1Q96GC9 406 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 PRR11Q96HE9 360 aaPredicted RBP10.59□□□□□ -0.71
VPS39-214ENST00000614932 CNBD2Q96M20 576 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 COQ7Q99807 217 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 TSG101Q99816 390 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 REEP2Q9BRK0 252 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 CAAP1Q9H8G2 361 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 FANCEQ9HB96 536 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 AMFRQ9UKV5 643 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 CDH7Q9ULB5 785 aa10.59□□□□□ -0.71
VPS39-214ENST00000614932 MTO1Q9Y2Z2 717 aaKnown RBP10.59□□□□□ -0.71
VPS39-214ENST00000614932 CNTNAP1P78357 1384 aa10.58□□□□□ -0.72
VPS39-214ENST00000614932 CFAP99D6REC4 459 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms