RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SIX4Q9UIU6 781 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 EML5Q05BV3 1969 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 SMG1Q96Q15 3661 aaKnown RBP6.67□□□□□ -1.34
CUX1-220ENST00000607092 IGHV1OR15-9A0A0B4J2B8 117 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 A0A1B0GTW7 788 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 SPAARA0A1B0GVQ0 90 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 FAM92AA1XBS5 289 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 GOLGA8IPA6NC78 632 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 GOLGA8JA6NMD2 632 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 E9PAM4 449 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 TAF4O00268 1085 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 CACNG3O60359 315 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 PHACTR2O75167 634 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 ATP2C2O75185 946 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 CLSTN1O94985 981 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 DLATP10515 647 aaKnown RBP6.66□□□□□ -1.34
CUX1-220ENST00000607092 CDK4P11802 303 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 PDIA4P13667 645 aaKnown RBP6.66□□□□□ -1.34
CUX1-220ENST00000607092 HNRNPLP14866 589 aaKnown RBP eCLIP6.66□□□□□ -1.34
CUX1-220ENST00000607092 GABRG2P18507 467 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 SPINK2P20155 84 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 LMO2P25791 158 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 ATP5C1P36542 298 aaKnown RBP6.66□□□□□ -1.34
CUX1-220ENST00000607092 SLC6A11P48066 632 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 CDR1P51861 262 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 USP46P62068 366 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 KDSRQ06136 332 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 SFSWAPQ12872 951 aaKnown RBP6.66□□□□□ -1.34
CUX1-220ENST00000607092 PSMD6Q15008 389 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 EIF4HQ15056 248 aaKnown RBP6.66□□□□□ -1.34
CUX1-220ENST00000607092 SNRNP35Q16560 246 aaKnown RBP6.66□□□□□ -1.34
CUX1-220ENST00000607092 GAB4Q2WGN9 574 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 INAVAQ3KP66 663 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 KLHDC10Q6PID8 442 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 HTR3DQ70Z44 454 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 GLRX5Q86SX6 157 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 UNC93AQ86WB7 457 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 NAXDQ8IW45 347 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 TMEM130Q8N3G9 435 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 TRIML1Q8N9V2 468 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 TAF4BQ92750 862 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 EPSTI1Q96J88 318 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 HSPA12BQ96MM6 686 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 DCBLD2Q96PD2 775 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 CGRRF1Q99675 332 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 GABRG3Q99928 467 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 MED10Q9BTT4 135 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 BBS2Q9BXC9 721 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 DCLK3Q9C098 648 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 PCIF1Q9H4Z3 704 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 VRTNQ9H8Y1 702 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 PNPLA8Q9NP80 782 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 SCUBE2Q9NQ36 999 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 TMEM74BQ9NUR3 256 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 DNAJC17Q9NVM6 304 aaKnown RBP6.66□□□□□ -1.34
CUX1-220ENST00000607092 IL37Q9NZH6 218 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 CALCOCO1Q9P1Z2 691 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 DKK4Q9UBT3 224 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 MBD1Q9UIS9 605 aaPredicted RBP6.66□□□□□ -1.34
CUX1-220ENST00000607092 KLK13Q9UKR3 277 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 PCDHGB2Q9Y5G2 931 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 KNL1Q8NG31 2342 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 OBSL1O75147 1896 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 ANK1P16157 1881 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 PLXND1Q9Y4D7 1925 aa6.66□□□□□ -1.34
CUX1-220ENST00000607092 FREM2Q5SZK8 3169 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 KNTC1P50748 2209 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 VPS37CA5D8V6 355 aaPredicted RBP6.65□□□□□ -1.34
CUX1-220ENST00000607092 MEI4A8MW99 385 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 FLRT2O43155 660 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 COCHO43405 550 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 TIMM44O43615 452 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 STX6O43752 255 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 DFNA5O60443 496 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 SYNCRIPO60506 623 aaKnown RBP6.65□□□□□ -1.34
CUX1-220ENST00000607092 TLR5O60602 858 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 ADAM23O75077 832 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 CYBBP04839 570 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 RPN1P04843 607 aaKnown RBP6.65□□□□□ -1.34
CUX1-220ENST00000607092 FTH1P19P0C7X4 201 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 ACADMP11310 421 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 CD59P13987 128 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 CD6P30203 668 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 CHKAP35790 457 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 DGKGP49619 791 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 SLC5A3P53794 718 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 ZNF445P59923 1031 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 ZXDBP98169 803 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 KCNA1Q09470 495 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 IFRD2Q12894 506 aaPredicted RBP6.65□□□□□ -1.34
CUX1-220ENST00000607092 ORC1Q13415 861 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 ZNF699Q32M78 642 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 ZNF667Q5HYK9 610 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 EMC10Q5UCC4 262 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 FAM35AQ86V20 835 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 CBWD2Q8IUF1 395 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 PHTF2Q8N3S3 785 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 CHCHD4Q8N4Q1 142 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 ZNF276Q8N554 614 aa6.65□□□□□ -1.34
CUX1-220ENST00000607092 TTC39CQ8N584 583 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms