RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 PON2Q15165 354 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 ITPRIPL2Q3MIP1 535 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 TAF3Q5VWG9 929 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 TMEM270Q6UE05 265 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 NOP9Q86U38 636 aaKnown RBP13.39□□□□□ -0.27
UPF1-208ENST00000600012 SLC47A2Q86VL8 602 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 FMNL3Q8IVF7 1028 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 TTC8Q8TAM2 541 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 EPS8L1Q8TE68 723 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 JAKMIP2Q96AA8 810 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 MMS19Q96T76 1030 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.39□□□□□ -0.27
UPF1-208ENST00000600012 SEMA4GQ9NTN9 838 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 HMGXB4Q9UGU5 601 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 BZW2Q9Y6E2 419 aaKnown RBP13.39□□□□□ -0.27
UPF1-208ENST00000600012 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.39□□□□□ -0.27
UPF1-208ENST00000600012 ATG2BQ96BY7 2078 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 EPG5Q9HCE0 2579 aa13.39□□□□□ -0.27
UPF1-208ENST00000600012 FAM170AA1A519 330 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 USP27XA6NNY8 438 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 ESPNB1AK53 854 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 SLC30A4O14863 429 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 AKR1B10O60218 316 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 CCDC172P0C7W6 258 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 HAPLN1P10915 354 aaPredicted RBP13.38□□□□□ -0.27
UPF1-208ENST00000600012 CYP11B1P15538 503 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 PNPLA4P41247 253 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 PDE6CP51160 858 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 ZNF132P52740 706 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 YWHAEP62258 255 aaKnown RBP13.38□□□□□ -0.27
UPF1-208ENST00000600012 GFPT1Q06210 699 aaPredicted RBP13.38□□□□□ -0.27
UPF1-208ENST00000600012 TNK2Q07912 1038 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 SRSF5Q13243 272 aaKnown RBP13.38□□□□□ -0.27
UPF1-208ENST00000600012 ORC1Q13415 861 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 CSRP2Q16527 193 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 ASTE1Q2TB18 679 aaPredicted RBP13.38□□□□□ -0.27
UPF1-208ENST00000600012 ZNF394Q53GI3 561 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 HEATR6Q6AI08 1181 aaKnown RBP13.38□□□□□ -0.27
UPF1-208ENST00000600012 PRR23CQ6ZRP0 262 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 CEP68Q76N32 757 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 CCDC170Q8IYT3 715 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 FAXDC2Q96IV6 333 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 TWNKQ96RR1 684 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 MRPL45Q9BRJ2 306 aaKnown RBP13.38□□□□□ -0.27
UPF1-208ENST00000600012 SYT11Q9BT88 431 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 CYP3A43Q9HB55 503 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 SEPT11Q9NVA2 429 aaKnown RBP13.38□□□□□ -0.27
UPF1-208ENST00000600012 TRMT1Q9NXH9 659 aaKnown RBP13.38□□□□□ -0.27
UPF1-208ENST00000600012 NOCTQ9UK39 431 aaKnown RBP13.38□□□□□ -0.27
UPF1-208ENST00000600012 CNTN6Q9UQ52 1028 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 REXO2Q9Y3B8 237 aaKnown RBP13.38□□□□□ -0.27
UPF1-208ENST00000600012 ADGRG1Q9Y653 693 aa13.38□□□□□ -0.27
UPF1-208ENST00000600012 CNOT1A5YKK6 2376 aaKnown RBP13.38□□□□□ -0.27
UPF1-208ENST00000600012 A0A087X0T9 212 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 A0A0U1RQJ8 604 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.37□□□□□ -0.27
UPF1-208ENST00000600012 KPNA7A9QM74 516 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 EIF3CLB5ME19 914 aaKnown RBP13.37□□□□□ -0.27
UPF1-208ENST00000600012 DDX3XO00571 662 aaKnown RBP eCLIP13.37□□□□□ -0.27
UPF1-208ENST00000600012 MMEP08473 750 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 FAM228BP0C875 321 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 CHRNB2P17787 502 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 DDX6P26196 483 aaKnown RBP eCLIP13.37□□□□□ -0.27
UPF1-208ENST00000600012 GNA15P30679 374 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 CYP27A1Q02318 531 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 WSCD1Q658N2 575 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 WDR5BQ86VZ2 330 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 DCP1BQ8IZD4 617 aaKnown RBP13.37□□□□□ -0.27
UPF1-208ENST00000600012 CMTM8Q8IZV2 173 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 WHAMMQ8TF30 809 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 GIPC2Q8TF65 315 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 CNTNAP3BQ96NU0 1288 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 EIF3CQ99613 913 aaKnown RBP13.37□□□□□ -0.27
UPF1-208ENST00000600012 AGPAT1Q99943 283 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 SLC46A2Q9BY10 475 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 CNTNAP3Q9BZ76 1288 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 ELOVL4Q9GZR5 314 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 ABI2Q9NYB9 513 aaPredicted RBP13.37□□□□□ -0.27
UPF1-208ENST00000600012 ADAMTS1Q9UHI8 967 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 L1RE1Q9UN81 338 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 PPP2R2CQ9Y2T4 447 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 NME7Q9Y5B8 376 aa13.37□□□□□ -0.27
UPF1-208ENST00000600012 SOBPA7XYQ1 873 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 THAP12O43422 761 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 HCRTO43612 131 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 CILPO75339 1184 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 ADRB1P08588 477 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 CCDC175P0C221 793 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 TNFAIP3P21580 790 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 BRD2P25440 801 aaKnown RBP13.36□□□□□ -0.27
UPF1-208ENST00000600012 AVPR1AP37288 418 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 CDR1P51861 262 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 NDST1P52848 882 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 RAD23BP54727 409 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 TSPY1Q01534 308 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 FMO1Q01740 532 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 INCA1Q0VD86 236 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 SLC18A3Q16572 532 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 SOWAHAQ2M3V2 549 aa13.36□□□□□ -0.27
UPF1-208ENST00000600012 LRRTM3Q86VH5 581 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms