RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 TSPY26PQ9H489 355 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 LRRC4Q9HBW1 653 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 GTSE1Q9NYZ3 720 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 MIA3Q5JRA6 1907 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 PAPSS1O43252 624 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 GFPT2O94808 682 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 ARSAP15289 507 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 VCPP55072 806 aaKnown RBP20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 MLLT6P55198 1093 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 PLCB2Q00722 1185 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 PRKCQQ04759 706 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 FZD5Q13467 585 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 GAB4Q2WGN9 574 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 SLC20A1Q8WUM9 679 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 OSCP1Q8WVF1 389 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 IRGQQ8WZA9 623 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 PBXIP1Q96AQ6 731 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 CPXM1Q96SM3 734 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 LINC00597Q9H2U6 94 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 FBXL21Q9UKT6 434 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 WNT6Q9Y6F9 365 aa20.47■□□□□ 0.87
SHKBP1-221ENST00000599833 E5RJQ4 531 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 PI15O43692 258 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 SOX9P48436 509 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 BPIFB4P59827 614 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 PTPN20Q4JDL3 420 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 BSPRYQ5W0U4 402 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 E4F1Q66K89 784 aaPredicted RBP20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 TXNDC11Q6PKC3 985 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 FBXL6Q8N531 539 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 TMEM105Q8N8V8 129 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 C1orf131Q8NDD1 294 aaKnown RBP20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 EBF3Q9H4W6 596 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 TBC1D17Q9HA65 648 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 DLGAP2Q9P1A6 1054 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 CFAP97Q9P2B7 532 aa20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 MTF2Q9Y483 593 aaPredicted RBP20.46■□□□□ 0.87
SHKBP1-221ENST00000599833 SCAMP3O14828 347 aaKnown RBP20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 MMEP08473 750 aa20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 GLULP15104 373 aa20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 CD72P21854 359 aa20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 ATP5C1P36542 298 aaKnown RBP20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 FMO1Q01740 532 aa20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 SCUBE3Q8IX30 993 aa20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 YAF2Q8IY57 180 aa20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 SIX6OS1Q8N1H7 587 aa20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 ARHGAP18Q8N392 663 aa20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 P2RY11Q96G91 374 aa20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 SYT11Q9BT88 431 aa20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 FOXQ1Q9C009 403 aa20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 PIAS3Q9Y6X2 628 aa20.45■□□□□ 0.86
SHKBP1-221ENST00000599833 KIAA1549LQ6ZVL6 1849 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 E2F8A0AVK6 867 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 FBXO21O94952 628 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 ERBB2P04626 1255 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 RUNX3Q13761 415 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 PDGFRLQ15198 375 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 C10orf120Q5SQS8 335 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 TAF3Q5VWG9 929 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 MSANTD2Q6P1R3 559 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 Q6ZNB5 142 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 TPRG1Q6ZUI0 275 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 TTC8Q8TAM2 541 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 MIS12Q9H081 205 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 THG1LQ9NWX6 298 aaKnown RBP20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 DUS2Q9NX74 493 aaKnown RBP20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 DNMT3LQ9UJW3 386 aa20.44■□□□□ 0.86
SHKBP1-221ENST00000599833 MUC6Q6W4X9 2439 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 STC2O76061 302 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 SERPINC1P01008 464 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 LTFP02788 710 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 KLKB1P03952 638 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 CYP1A1P04798 512 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 RALAP11233 206 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 AOC1P19801 751 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 CTHP32929 405 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 STAT1P42224 750 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 ACADSBP45954 432 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 CLCN5P51795 746 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 NOMO3P69849 1222 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 ITPRIPL2Q3MIP1 535 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 FILIP1LQ4L180 1135 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 FIGNQ5HY92 759 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 NAIF1Q69YI7 327 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 OLFML1Q6UWY5 402 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 HTR3DQ70Z44 454 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 IRF2BP2Q7Z5L9 587 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 DDX42Q86XP3 938 aaKnown RBP eCLIP20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 ZNF677Q86XU0 584 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 CCDC105Q8IYK2 499 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 ADGRG2Q8IZP9 1017 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 EDEM1Q92611 657 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 PPP1R13BQ96KQ4 1090 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 SPAG5Q96R06 1193 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 PCDHB18PQ96TA0 734 aa20.43■□□□□ 0.86
SHKBP1-221ENST00000599833 KANSL1LA0AUZ9 987 aa20.42■□□□□ 0.86
SHKBP1-221ENST00000599833 SPECC1L-ADORA2AF8WAN1 911 aa20.42■□□□□ 0.86
SHKBP1-221ENST00000599833 GOLGA6L19H0YKK7 550 aa20.42■□□□□ 0.86
SHKBP1-221ENST00000599833 AP5Z1O43299 807 aa20.42■□□□□ 0.86
SHKBP1-221ENST00000599833 TARSP26639 723 aaKnown RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms