RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 AFPP02771 609 aaKnown RBP12.78□□□□□ -0.36
LIG1-217ENST00000599165 KLKB1P03952 638 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 VDRP11473 427 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 HNRNPLP14866 589 aaKnown RBP eCLIP12.78□□□□□ -0.36
LIG1-217ENST00000599165 ANP32AP39687 249 aaKnown RBP12.78□□□□□ -0.36
LIG1-217ENST00000599165 APBA1Q02410 837 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 GCNT1Q02742 428 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 SGO2Q562F6 1265 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 DPY19L2P1Q6NXN4 242 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 GJB7Q6PEY0 223 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 TMEM270Q6UE05 265 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 LCLAT1Q6UWP7 414 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 HTR3DQ70Z44 454 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 TMEM25Q86YD3 366 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 PPM1KQ8N3J5 372 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 RPLP0P6Q8NHW5 317 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 UBA3Q8TBC4 463 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 USP33Q8TEY7 942 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 ATRIPQ8WXE1 791 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 CNOT6LQ96LI5 555 aaKnown RBP12.78□□□□□ -0.36
LIG1-217ENST00000599165 ULBP1Q9BZM6 244 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 INTS2Q9H0H0 1204 aaKnown RBP12.78□□□□□ -0.36
LIG1-217ENST00000599165 CLIC5Q9NZA1 410 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 NAGPAQ9UK23 515 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 SMG5Q9UPR3 1016 aaKnown RBP12.78□□□□□ -0.36
LIG1-217ENST00000599165 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.78□□□□□ -0.36
LIG1-217ENST00000599165 DMXL1Q9Y485 3027 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 DNAH14Q0VDD8 3507 aa12.78□□□□□ -0.36
LIG1-217ENST00000599165 A0A0A0MRY4 1105 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 TRIM24O15164 1050 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 HOXC11O43248 304 aaPredicted RBP12.77□□□□□ -0.37
LIG1-217ENST00000599165 STC2O76061 302 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 PAEPP09466 180 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 ADH5P11766 374 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 CD19P15391 556 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 TRIM21P19474 475 aaKnown RBP12.77□□□□□ -0.37
LIG1-217ENST00000599165 TGM1P22735 817 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 BRD2P25440 801 aaKnown RBP12.77□□□□□ -0.37
LIG1-217ENST00000599165 ATP5C1P36542 298 aaKnown RBP12.77□□□□□ -0.37
LIG1-217ENST00000599165 PLA2G4AP47712 749 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 PXNP49023 591 aaPredicted RBP12.77□□□□□ -0.37
LIG1-217ENST00000599165 TKTL1P51854 596 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 BCAT1P54687 386 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 AMPD2Q01433 879 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 BST2Q10589 180 aaKnown RBP12.77□□□□□ -0.37
LIG1-217ENST00000599165 HEATR6Q6AI08 1181 aaKnown RBP12.77□□□□□ -0.37
LIG1-217ENST00000599165 MLKLQ8NB16 471 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 RBBP8NLQ8NC74 664 aaPredicted RBP12.77□□□□□ -0.37
LIG1-217ENST00000599165 GPT2Q8TD30 523 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 SLC35F5Q8WV83 523 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 OTUB2Q96DC9 234 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 SPHK2Q9NRA0 654 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 TBC1D14Q9P2M4 693 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 AJAP1Q9UKB5 411 aaPredicted RBP12.77□□□□□ -0.37
LIG1-217ENST00000599165 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.77□□□□□ -0.37
LIG1-217ENST00000599165 SH3BP1Q9Y3L3 701 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 PCDHB4Q9Y5E5 795 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 RALGAPA1Q6GYQ0 2036 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 ABCA7Q8IZY2 2146 aa12.77□□□□□ -0.37
LIG1-217ENST00000599165 BECN2A8MW95 431 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 ADH1CP00326 375 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 SLC9A1P19634 815 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 EIF2DP41214 584 aaKnown RBP12.76□□□□□ -0.37
LIG1-217ENST00000599165 KIR2DL1P43626 348 aaPredicted RBP12.76□□□□□ -0.37
LIG1-217ENST00000599165 PSEN1P49768 467 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 YWHAEP62258 255 aaKnown RBP12.76□□□□□ -0.37
LIG1-217ENST00000599165 ADIGQ0VDE8 80 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 NR1H3Q13133 447 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 FBXO43Q4G163 708 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 C10orf120Q5SQS8 335 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 EMC10Q5UCC4 262 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 PMF1Q6P1K2 205 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 SYT13Q7L8C5 426 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 WDR5BQ86VZ2 330 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 LONP2Q86WA8 852 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 KCTD13Q8WZ19 329 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 SECISBP2LQ93073 1101 aaKnown RBP12.76□□□□□ -0.37
LIG1-217ENST00000599165 HHIPQ96QV1 700 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 CRACR2AQ9BSW2 395 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 SIX2Q9NPC8 291 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 ACP6Q9NPH0 428 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 MARK1Q9P0L2 795 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 DNMT3LQ9UJW3 386 aa12.76□□□□□ -0.37
LIG1-217ENST00000599165 YJEFN3A6XGL0 299 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 E7ENQ6 273 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 CACNA1AO00555 2505 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 TULP3O75386 442 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 KAT7O95251 611 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 ZBED1O96006 694 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 SETSIPP0DME0 302 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 CCDC192P0DO97 292 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 RPL34P49207 117 aaKnown RBP12.75□□□□□ -0.37
LIG1-217ENST00000599165 NRLP54845 237 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 SEC13P55735 322 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 YWHAGP61981 247 aaKnown RBP eCLIP12.75□□□□□ -0.37
LIG1-217ENST00000599165 GAD2Q05329 585 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 KDSRQ06136 332 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 DMC1Q14565 340 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 PPP2R5DQ14738 602 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 CNGA2Q16280 664 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms