RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 IRS1P35568 1242 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 SULT1E1P49888 294 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 DNA2P51530 1060 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 TWF1Q12792 350 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 CAMK1Q14012 370 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 CDO1Q16878 200 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 SLC25A52Q3SY17 297 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 CCDC14Q49A88 953 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 LRRC38Q5VT99 294 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 BSPRYQ5W0U4 402 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 HFE2Q6ZVN8 426 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 STRADAQ7RTN6 431 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 BHLHA9Q7RTU4 235 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 ELMOD1Q8N336 334 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 SLC7A14Q8TBB6 771 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 RNF139Q8WU17 664 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 FAM172AQ8WUF8 416 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 PPP2R3CQ969Q6 453 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 CFAP57Q96MR6 1250 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 PLEKHA4Q9H4M7 779 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 ZNF576Q9H609 170 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 TMEM51Q9NW97 253 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 UXTQ9UBK9 157 aaPredicted RBP16.15■□□□□ 0.18
UPF1-206ENST00000598471 PACSIN2Q9UNF0 486 aaPredicted RBP16.15■□□□□ 0.18
UPF1-206ENST00000598471 MAGED2Q9UNF1 606 aaPredicted RBP16.15■□□□□ 0.18
UPF1-206ENST00000598471 KCNK3O14649 394 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 FANCGO15287 622 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 LRCH4O75427 683 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 C8AP07357 584 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 KRT7P08729 469 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 RALAP11233 206 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 CLCN4P51793 760 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 USP46P62068 366 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 ATP11AP98196 1134 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 TAF10Q12962 218 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 C15orf59Q2T9L4 293 aaPredicted RBP16.14■□□□□ 0.17
UPF1-206ENST00000598471 ODF2Q5BJF6 829 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 TRNP1Q6NT89 227 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 GPR153Q6NV75 609 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 GDPD5Q8WTR4 605 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 HDAC7Q8WUI4 952 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 CD101Q93033 1021 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 TRMT2BQ96GJ1 504 aaKnown RBP16.14■□□□□ 0.17
UPF1-206ENST00000598471 PBKQ96KB5 322 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 OSBPL9Q96SU4 736 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 CDK5RAP1Q96SZ6 601 aaKnown RBP16.14■□□□□ 0.17
UPF1-206ENST00000598471 CLIC5Q9NZA1 410 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 GMIPQ9P107 970 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 PCDHA3Q9Y5H8 950 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 LAMA3Q16787 3333 aa16.14■□□□□ 0.17
UPF1-206ENST00000598471 A0A1W2PQH9 124 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 CES2O00748 559 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 DDX3YO15523 660 aaKnown RBP16.13■□□□□ 0.17
UPF1-206ENST00000598471 PRPSAP2O60256 369 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 CLASP2O75122 1294 aaKnown RBP16.13■□□□□ 0.17
UPF1-206ENST00000598471 F9P00740 461 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 SPATA31D3P0C874 917 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 GBP1P32455 592 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 RDXP35241 583 aaKnown RBP16.13■□□□□ 0.17
UPF1-206ENST00000598471 PPP3CCP48454 512 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 RWDD2BP57060 319 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 AMPD2Q01433 879 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 MTMR3Q13615 1198 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 GRIN2CQ14957 1233 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 PPM1LQ5SGD2 360 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 ZFYVE27Q5T4F4 411 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 SPATA31D4Q6ZUB0 917 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 SND1Q7KZF4 910 aaKnown RBP eCLIP16.13■□□□□ 0.17
UPF1-206ENST00000598471 RSRC2Q7L4I2 434 aaKnown RBP16.13■□□□□ 0.17
UPF1-206ENST00000598471 POLNQ7Z5Q5 900 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 TADA2BQ86TJ2 420 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 DEFB123Q8N688 67 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 STKLD1Q8NE28 680 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 EDEM1Q92611 657 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 PSMG2Q969U7 264 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 MYRFLQ96LU7 910 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 TBCBQ99426 244 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 NPY6RQ99463 290 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 CARD9Q9H257 536 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 FAM204AQ9H8W3 233 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 OLA1Q9NTK5 396 aaKnown RBP16.13■□□□□ 0.17
UPF1-206ENST00000598471 DDX56Q9NY93 547 aaKnown RBP16.13■□□□□ 0.17
UPF1-206ENST00000598471 NAALADL1Q9UQQ1 740 aa16.13■□□□□ 0.17
UPF1-206ENST00000598471 PLXNA3P51805 1871 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 SPDYE4A6NLX3 237 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 M0QYT0 321 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 RFXAPO00287 272 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 MIPP30301 263 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 GJC1P36383 396 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 CETN2P41208 172 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 DEUP1Q05D60 604 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 ZNF697Q5TEC3 545 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 SYPL2Q5VXT5 272 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 SCYL2Q6P3W7 929 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 SCD5Q86SK9 330 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 CPNE8Q86YQ8 564 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 CENPIQ92674 756 aaPredicted RBP16.12■□□□□ 0.17
UPF1-206ENST00000598471 NT5C3BQ969T7 300 aa16.12■□□□□ 0.17
UPF1-206ENST00000598471 ZNF512Q96ME7 567 aaPredicted RBP16.12■□□□□ 0.17
UPF1-206ENST00000598471 PSMB7Q99436 277 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms