RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 MEA1Q16626 185 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 C10orf120Q5SQS8 335 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 PM20D1Q6GTS8 502 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 FSTL4Q6MZW2 842 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 Q6ZS52 159 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 ADGRG2Q8IZP9 1017 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 SCML4Q8N228 414 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 UBA3Q8TBC4 463 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 ENOX1Q8TC92 643 aaKnown RBP17.03■□□□□ 0.32
TRIM28-206ENST00000595974 CD101Q93033 1021 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 ZSWIM1Q9BR11 485 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 ULBP1Q9BZM6 244 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 NDST4Q9H3R1 872 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 LSM7Q9UK45 103 aaKnown RBP17.03■□□□□ 0.32
TRIM28-206ENST00000595974 NFE2L3Q9Y4A8 694 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 KCNJ18B7U540 433 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 SCAMP3O14828 347 aaKnown RBP17.02■□□□□ 0.32
TRIM28-206ENST00000595974 PAPSS2O95340 614 aaPredicted RBP17.02■□□□□ 0.32
TRIM28-206ENST00000595974 IRF1P10914 325 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 PON1P27169 355 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 YWHAGP61981 247 aaKnown RBP eCLIP17.02■□□□□ 0.32
TRIM28-206ENST00000595974 CSTF1Q05048 431 aaKnown RBP17.02■□□□□ 0.32
TRIM28-206ENST00000595974 KCNJ12Q14500 433 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 STX1AQ16623 288 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 FBXO43Q4G163 708 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 VWA3BQ502W6 1294 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 HSP90AA4PQ58FG1 418 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 MIIPQ5JXC2 388 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 SASS6Q6UVJ0 657 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 HTR3DQ70Z44 454 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 ALYREFQ86V81 257 aaKnown RBP17.02■□□□□ 0.32
TRIM28-206ENST00000595974 SIX6OS1Q8N1H7 587 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 SLC35F5Q8WV83 523 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 FAM126AQ9BYI3 521 aaPredicted RBP17.02■□□□□ 0.32
TRIM28-206ENST00000595974 CNGB3Q9NQW8 809 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 ANO10Q9NW15 660 aa17.02■□□□□ 0.32
TRIM28-206ENST00000595974 USP34Q70CQ2 3546 aa17.02■□□□□ 0.31
TRIM28-206ENST00000595974 MYO18AQ92614 2054 aaKnown RBP17.01■□□□□ 0.31
TRIM28-206ENST00000595974 ADH5P11766 374 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 EIF2DP41214 584 aaKnown RBP17.01■□□□□ 0.31
TRIM28-206ENST00000595974 CXCL12P48061 93 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 GALK1P51570 392 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 GAB4Q2WGN9 574 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 TCP11X2Q5H9J9 407 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 NAIF1Q69YI7 327 aaPredicted RBP17.01■□□□□ 0.31
TRIM28-206ENST00000595974 GJB7Q6PEY0 223 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 BHLHA9Q7RTU4 235 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 BBS7Q8IWZ6 715 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 SHC3Q92529 594 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 NELL1Q92832 810 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 SECISBP2LQ93073 1101 aaKnown RBP17.01■□□□□ 0.31
TRIM28-206ENST00000595974 NKD2Q969F2 451 aaPredicted RBP17.01■□□□□ 0.31
TRIM28-206ENST00000595974 HSFY1Q96LI6 401 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 SEMA4AQ9H3S1 761 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 SAMSN1Q9NSI8 373 aaKnown RBP17.01■□□□□ 0.31
TRIM28-206ENST00000595974 OLA1Q9NTK5 396 aaKnown RBP17.01■□□□□ 0.31
TRIM28-206ENST00000595974 NUDT5Q9UKK9 219 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 PCDHGA2Q9Y5H1 932 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 ZFHX2Q9C0A1 2572 aaPredicted RBP17.01■□□□□ 0.31
TRIM28-206ENST00000595974 DMDP11532 3685 aa17.01■□□□□ 0.31
TRIM28-206ENST00000595974 MDM4O15151 490 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 HOXC11O43248 304 aaPredicted RBP17■□□□□ 0.31
TRIM28-206ENST00000595974 MED7O43513 233 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 GREM1O60565 184 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 EGFP01133 1207 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 TDGF1P13385 188 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 GNA15P30679 374 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 OPRD1P41143 372 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 COG7P83436 770 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 SATB1Q01826 763 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 CDKAL1Q5VV42 579 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 PMF1Q6P1K2 205 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 RHBDF2Q6PJF5 856 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 RSRC2Q7L4I2 434 aaKnown RBP17■□□□□ 0.31
TRIM28-206ENST00000595974 MIB1Q86YT6 1006 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 CCDC26Q8TAB7 109 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 WBP2Q969T9 261 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 FBRSL1Q9HCM7 1045 aaKnown RBP17■□□□□ 0.31
TRIM28-206ENST00000595974 SIX2Q9NPC8 291 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 ZSCAN32Q9NX65 697 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 RASAL2Q9UJF2 1139 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 STRIP2Q9ULQ0 834 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 R4GN57 208 aa17■□□□□ 0.31
TRIM28-206ENST00000595974 PTPRZ1P23471 2315 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-206ENST00000595974 SPAG17Q6Q759 2223 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 PRR23AA6NEV1 266 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 BECN2A8MW95 431 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-206ENST00000595974 PES1O00541 588 aaKnown RBP16.99■□□□□ 0.31
TRIM28-206ENST00000595974 GFRA3O60609 400 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 ATG13O75143 517 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 RNF40O75150 1001 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 STC2O76061 302 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 CALCAP01258 141 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 RGS7P49802 495 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 NRLP54845 237 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 DAOAP59103 153 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 APBA1Q02410 837 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 GAD2Q05329 585 aa16.99■□□□□ 0.31
TRIM28-206ENST00000595974 EFEMP1Q12805 493 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms