RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 RBM43Q6ZSC3 357 aaKnown RBP13.21□□□□□ -0.29
UPF1-203ENST00000594504 SV2AQ7L0J3 742 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 BBS7Q8IWZ6 715 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 FUKQ8N0W3 1084 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 C12orf29Q8N999 325 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 IL17RCQ8NAC3 791 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 LSM14BQ9BX40 385 aaKnown RBP13.21□□□□□ -0.29
UPF1-203ENST00000594504 VRTNQ9H8Y1 702 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 METTL14Q9HCE5 456 aaKnown RBP13.21□□□□□ -0.29
UPF1-203ENST00000594504 ARHGEF4Q9NR80 690 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 IL37Q9NZH6 218 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 ARMCX3Q9UH62 379 aaPredicted RBP13.21□□□□□ -0.29
UPF1-203ENST00000594504 DACH1Q9UI36 760 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 RWDD2AQ9UIY3 292 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 SH3BP1Q9Y3L3 701 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 NUP205Q92621 2012 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 FRYLO94915 3013 aa13.21□□□□□ -0.3
UPF1-203ENST00000594504 MYH10P35580 1976 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 A0A0A0MRY4 1105 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 E2F8A0AVK6 867 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 GIPC1O14908 333 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 ADAM23O75077 832 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 AP1G2O75843 785 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 FGFR1OPO95684 399 aaKnown RBP13.2□□□□□ -0.3
UPF1-203ENST00000594504 TBX18O95935 607 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 GCLMP48507 274 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 DHPSP49366 369 aaPredicted RBP13.2□□□□□ -0.3
UPF1-203ENST00000594504 NDST1P52848 882 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 STX17P56962 302 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 MAP3K7CLP57077 242 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 GAD2Q05329 585 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 PPP3CAQ08209 521 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 CCDC183Q5T5S1 534 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 TMEM25Q86YD3 366 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 PHTF2Q8N3S3 785 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 PDZD8Q8NEN9 1154 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 CCDC26Q8TAB7 109 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 SLC2A14Q8TDB8 520 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 DDX1Q92499 740 aaKnown RBP13.2□□□□□ -0.3
UPF1-203ENST00000594504 TAF4BQ92750 862 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 ERLEC1Q96DZ1 483 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 CNOT6LQ96LI5 555 aaKnown RBP13.2□□□□□ -0.3
UPF1-203ENST00000594504 EDEM2Q9BV94 578 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 TMEM8AQ9HCN3 771 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 DMAP1Q9NPF5 467 aaPredicted RBP13.2□□□□□ -0.3
UPF1-203ENST00000594504 KRT82Q9NSB4 513 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 FAM49BQ9NUQ9 324 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 TBC1D14Q9P2M4 693 aa13.2□□□□□ -0.3
UPF1-203ENST00000594504 ATP8B3O60423 1300 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 GNA14O95837 355 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 ADH1CP00326 375 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 ZDHHC11BP0C7U3 371 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 PTMSP20962 102 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 ERCC5P28715 1186 aaPredicted RBP13.19□□□□□ -0.3
UPF1-203ENST00000594504 ADORA2BP29275 332 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 PMLP29590 882 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 GRIA2P42262 883 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 PIK3CAP42336 1068 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 WASP42768 502 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 IRX4P78413 519 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 ST3GAL2Q16842 350 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 SGSM1Q2NKQ1 1148 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 ANO4Q32M45 955 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 DPCR1Q3MIW9 517 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 CCDC40Q4G0X9 1142 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 DCAF17Q5H9S7 520 aaPredicted RBP13.19□□□□□ -0.3
UPF1-203ENST00000594504 CT47A1Q5JQC4 288 aaPredicted RBP13.19□□□□□ -0.3
UPF1-203ENST00000594504 TCERG1LQ5VWI1 586 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 SNX30Q5VWJ9 437 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 KRT39Q6A163 491 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 ARMCX6Q7L4S7 300 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 GPRIN1Q7Z2K8 1008 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 DDX42Q86XP3 938 aaKnown RBP eCLIP13.19□□□□□ -0.3
UPF1-203ENST00000594504 TMEFF1Q8IYR6 380 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 CRYBG2Q8N1P7 616 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 PGBD3Q8N328 593 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 DEFB119Q8N690 84 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 OLIG1Q8TAK6 271 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 HMGB4Q8WW32 186 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 OVCA2Q8WZ82 227 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 PIGKQ92643 395 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 JAKMIP2Q96AA8 810 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 SMARCD1Q96GM5 515 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 TNIP3Q96KP6 325 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 TWNKQ96RR1 684 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 OSER1Q9NX31 292 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 MBD1Q9UIS9 605 aaPredicted RBP13.19□□□□□ -0.3
UPF1-203ENST00000594504 NUDT5Q9UKK9 219 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 HCN2Q9UL51 889 aa13.19□□□□□ -0.3
UPF1-203ENST00000594504 CACNA1AO00555 2505 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 TCRBV21S2A2A0A5A6 115 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 LNP1A1A4G5 178 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 FAM92AA1XBS5 289 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 TBC1D3BA6NDS4 549 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 CDX4O14627 284 aaPredicted RBP13.18□□□□□ -0.3
UPF1-203ENST00000594504 TULP3O75386 442 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 HLA-DRAP01903 254 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 P4HA1P13674 534 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 EIF2DP41214 584 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms