RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 CNKSR2Q8WXI2 1034 aa17.15■□□□□ 0.34
LIG1-206ENST00000594067 IFT43Q96FT9 208 aa17.15■□□□□ 0.34
LIG1-206ENST00000594067 SRPK1Q96SB4 655 aaKnown RBP17.15■□□□□ 0.34
LIG1-206ENST00000594067 CNPY3Q9BT09 278 aa17.15■□□□□ 0.34
LIG1-206ENST00000594067 USP29Q9HBJ7 922 aa17.15■□□□□ 0.34
LIG1-206ENST00000594067 MTO1Q9Y2Z2 717 aaKnown RBP17.15■□□□□ 0.34
LIG1-206ENST00000594067 TTLL3Q9Y4R7 772 aa17.15■□□□□ 0.34
LIG1-206ENST00000594067 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.14■□□□□ 0.34
LIG1-206ENST00000594067 E5RJQ4 531 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 CHADO15335 359 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 GAS2O43903 313 aaKnown RBP17.14■□□□□ 0.34
LIG1-206ENST00000594067 PRPSAP2O60256 369 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 PGK2P07205 417 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 STAG3L1P0CL83 205 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 MYL2P10916 166 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 CYP3A5P20815 502 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 TFDP2Q14188 446 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 RCN2Q14257 317 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 LRRC74BQ6ZQY2 392 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 FAM183BPQ6ZVS7 135 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 APOBEC3FQ8IUX4 373 aaKnown RBP17.14■□□□□ 0.34
LIG1-206ENST00000594067 COPS5Q92905 334 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 RNF157Q96PX1 679 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 MECRQ9BV79 373 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 IQCGQ9H095 443 aaKnown RBP17.14■□□□□ 0.34
LIG1-206ENST00000594067 VCXQ9H320 206 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 CNTN3Q9P232 1028 aa17.14■□□□□ 0.34
LIG1-206ENST00000594067 FAM237BA0A1B0GVD1 139 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 C2CD4BA6NLJ0 364 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 RBL1P28749 1068 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 RGS7P49802 495 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 SLC26A11Q86WA9 606 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 VPS52Q8N1B4 723 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 PLD5Q8N7P1 536 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 PHC3Q8NDX5 983 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 DTX3LQ8TDB6 740 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 SPATC1LQ9H0A9 340 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 GGA3Q9NZ52 723 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 STX18Q9P2W9 335 aaKnown RBP17.14■□□□□ 0.33
LIG1-206ENST00000594067 PPP1R1BQ9UD71 204 aaPredicted RBP17.14■□□□□ 0.33
LIG1-206ENST00000594067 TNFSF13BQ9Y275 285 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 C2CD2Q9Y426 696 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 PPME1Q9Y570 386 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 TGDSO95455 350 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 C1QAP02745 245 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 HMGCRP04035 888 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 SKIP12755 728 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 FAM47CQ5HY64 1035 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 SH3D19Q5HYK7 790 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 WDR78Q5VTH9 848 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 TTC39BQ5VTQ0 682 aaPredicted RBP17.14■□□□□ 0.33
LIG1-206ENST00000594067 AP1ARQ63HQ0 302 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 DLK2Q6UY11 383 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 MCUR1Q96AQ8 359 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 PAK5Q9P286 719 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 ARMCX1Q9P291 453 aa17.14■□□□□ 0.33
LIG1-206ENST00000594067 ZC3H7BQ9UGR2 993 aaKnown RBP17.14■□□□□ 0.33
LIG1-206ENST00000594067 UGT1A9O60656 530 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 LGR5O75473 907 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 SNUPNO95149 360 aaKnown RBP17.13■□□□□ 0.33
LIG1-206ENST00000594067 VDRP11473 427 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 IGBP1P78318 339 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 BMPR2Q13873 1038 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 KRT72Q14CN4 511 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 CWF19L1Q69YN2 538 aaKnown RBP17.13■□□□□ 0.33
LIG1-206ENST00000594067 CXorf38Q8TB03 319 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 SPATA33Q96N06 139 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 SLC13A1Q9BZW2 595 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 MMADHCQ9H3L0 296 aaPredicted RBP17.13■□□□□ 0.33
LIG1-206ENST00000594067 UGT1A7Q9HAW7 530 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 UGT1A10Q9HAW8 530 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 UGT1A8Q9HAW9 530 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 SPAG6O75602 509 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 RARBP10826 455 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 IL4RP24394 825 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 NDST1P52848 882 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 CELF3Q5SZQ8 465 aaKnown RBP17.13■□□□□ 0.33
LIG1-206ENST00000594067 ALYREFQ86V81 257 aaKnown RBP17.13■□□□□ 0.33
LIG1-206ENST00000594067 GALNT15Q8N3T1 639 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.13■□□□□ 0.33
LIG1-206ENST00000594067 HPDLQ96IR7 371 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 CPB2Q96IY4 423 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 TRIM56Q9BRZ2 755 aaKnown RBP17.13■□□□□ 0.33
LIG1-206ENST00000594067 NGRNQ9NPE2 291 aaKnown RBP17.13■□□□□ 0.33
LIG1-206ENST00000594067 SMYD2Q9NRG4 433 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 TSPAN16Q9UKR8 245 aa17.13■□□□□ 0.33
LIG1-206ENST00000594067 MGAMO43451 1857 aa17.12■□□□□ 0.33
LIG1-206ENST00000594067 FCHO1O14526 889 aa17.12■□□□□ 0.33
LIG1-206ENST00000594067 ZBED1O96006 694 aa17.12■□□□□ 0.33
LIG1-206ENST00000594067 APRTP07741 180 aa17.12■□□□□ 0.33
LIG1-206ENST00000594067 ESRRAP11474 423 aaPredicted RBP17.12■□□□□ 0.33
LIG1-206ENST00000594067 BIRC2Q13490 618 aa17.12■□□□□ 0.33
LIG1-206ENST00000594067 CA9Q16790 459 aa17.12■□□□□ 0.33
LIG1-206ENST00000594067 CAND1Q86VP6 1230 aaKnown RBP17.12■□□□□ 0.33
LIG1-206ENST00000594067 PQLC3Q8N755 202 aa17.12■□□□□ 0.33
LIG1-206ENST00000594067 C12orf29Q8N999 325 aa17.12■□□□□ 0.33
LIG1-206ENST00000594067 OXNAD1Q96HP4 312 aaPredicted RBP17.12■□□□□ 0.33
LIG1-206ENST00000594067 PLAC1Q9HBJ0 212 aa17.12■□□□□ 0.33
LIG1-206ENST00000594067 POPDC2Q9HBU9 364 aa17.12■□□□□ 0.33
LIG1-206ENST00000594067 PNPLA8Q9NP80 782 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms