RNA–Protein interactions for RNA: ENST00000589867.2

MBD1-221, Transcript of methyl-CpG binding domain protein 1, human

TSL 3

Gene MBD1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-221	ENST00000589867	CYTH4	Q9UIA0	394 aa		18.2	■□□□□ 0.5
MBD1-221	ENST00000589867	DNAJC12	Q9UKB3	198 aa		18.2	■□□□□ 0.5
MBD1-221	ENST00000589867	MRPS17	Q9Y2R5	130 aa	Known RBP	18.2	■□□□□ 0.5
MBD1-221	ENST00000589867	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	18.2	■□□□□ 0.5
MBD1-221	ENST00000589867	E2F8	A0AVK6	867 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867		M0QYV0	167 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	FOXN3	O00409	490 aa	Predicted RBP	18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	TRDMT1	O14717	391 aa	Known RBP	18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	ZBED1	O96006	694 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	KRT5	P13647	590 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	OPRD1	P41143	372 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	RGS7	P49802	495 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	MFAP3	P55082	362 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	ADIG	Q0VDE8	80 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	MESP2	Q0VG99	397 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	MTAP	Q13126	283 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	RHBDF2	Q6PJF5	856 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867		Q6ZS52	159 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	ZNF606	Q8WXB4	792 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	ATP2A3	Q93084	1043 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	NAGPA	Q9UK23	515 aa		18.19	■□□□□ 0.5
MBD1-221	ENST00000589867	RIF1	Q5UIP0	2472 aa	Known RBP	18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	GPR179	Q6PRD1	2367 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	ANTXRL	A6NF34	631 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	YJEFN3	A6XGL0	299 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867		E7ENQ6	273 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	PIK3R2	O00459	728 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	HOXC13	P31276	330 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	ATP5C1	P36542	298 aa	Known RBP	18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	PSEN1	P49768	467 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	KLK7	P49862	253 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	GALK1	P51570	392 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	DAOA	P59103	153 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	MYL5	Q02045	173 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	DHCR24	Q15392	516 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	STIL	Q15468	1287 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	KLHDC7A	Q5VTJ3	777 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	PKN3	Q6P5Z2	889 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	BBS7	Q8IWZ6	715 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	SCML4	Q8N228	414 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	CPA6	Q8N4T0	437 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	WDTC1	Q8N5D0	677 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	CLEC4C	Q8WTT0	213 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	VPS16	Q9H269	839 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	FHOD1	Q9Y613	1164 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	KIAA1549L	Q6ZVL6	1849 aa		18.18	■□□□□ 0.5
MBD1-221	ENST00000589867	LETM1	O95202	739 aa	Predicted RBP	18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	KLKB1	P03952	638 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	IRF1	P10914	325 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	CHRM1	P11229	460 aa	Predicted RBP	18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	TDGF1	P13385	188 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	CLCN1	P35523	988 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	MAGEA9	P43362	315 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	YWHAG	P61981	247 aa	Known RBP eCLIP	18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	C1orf228	Q6PIY5	440 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	MAMSTR	Q6ZN01	415 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867		Q6ZNB5	142 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	HTR3D	Q70Z44	454 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	C12orf40	Q86WS4	652 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	DDX42	Q86XP3	938 aa	Known RBP eCLIP	18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	FAM71A	Q8IYT1	594 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	GAN	Q9H2C0	597 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	LRRC4	Q9HBW1	653 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	LIMA1	Q9UHB6	759 aa	Known RBP	18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	DNMT3L	Q9UJW3	386 aa		18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	MYO18A	Q92614	2054 aa	Known RBP	18.17	■□□□□ 0.5
MBD1-221	ENST00000589867	LRRC10B	A6NIK2	292 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	EPHB6	O15197	1021 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	NCAM2	O15394	837 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	STC2	O76061	302 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	EGF	P01133	1207 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	LCP1	P13796	627 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	GNA15	P30679	374 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	COPB1	P53618	953 aa	Known RBP	18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	SLC8A3	P57103	927 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	DRAP1	Q14919	205 aa	Predicted RBP	18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	MEA1	Q16626	185 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	KLHL40	Q2TBA0	621 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	ANO6	Q4KMQ2	910 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	C10orf120	Q5SQS8	335 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	SFTPA1	Q8IWL2	248 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	DHX40	Q8IX18	779 aa	Known RBP	18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	HSFY1	Q96LI6	401 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	FAM81B	Q96LP2	452 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	LSM14B	Q9BX40	385 aa	Known RBP	18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	SLC4A5	Q9BY07	1137 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	CNGB3	Q9NQW8	809 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	PRMT8	Q9NR22	394 aa	Predicted RBP	18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	SPATA6	Q9NWH7	488 aa	Predicted RBP	18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	TJP2	Q9UDY2	1190 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	SIK3	Q9Y2K2	1263 aa		18.16	■□□□□ 0.5
MBD1-221	ENST00000589867	THAP12	O43422	761 aa		18.15	■□□□□ 0.5
MBD1-221	ENST00000589867	NFATC1	O95644	943 aa		18.15	■□□□□ 0.5
MBD1-221	ENST00000589867	FYN	P06241	537 aa		18.15	■□□□□ 0.5
MBD1-221	ENST00000589867	SP9	P0CG40	484 aa		18.15	■□□□□ 0.5
MBD1-221	ENST00000589867	ATP1A3	P13637	1013 aa		18.15	■□□□□ 0.5
MBD1-221	ENST00000589867	UCHL3	P15374	230 aa		18.15	■□□□□ 0.5
MBD1-221	ENST00000589867	EFEMP1	Q12805	493 aa		18.15	■□□□□ 0.5
MBD1-221	ENST00000589867	LY6G5C	Q5SRR4	150 aa		18.15	■□□□□ 0.5
MBD1-221	ENST00000589867	BSPRY	Q5W0U4	402 aa		18.15	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms