RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	MAGOHB	Q96A72	148 aa	Known RBP	16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	RBM41	Q96IZ5	413 aa	Known RBP	16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	CFAP57	Q96MR6	1250 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	PEBP4	Q96S96	227 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	SMO	Q99835	787 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	HEMGN	Q9BXL5	484 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	LRRC19	Q9H756	370 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	KRT82	Q9NSB4	513 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	DSE	Q9UL01	958 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	MTUS1	Q9ULD2	1270 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	R3HDM2	Q9Y2K5	976 aa	Known RBP	16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	DCDC2C	A8MYV0	355 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	LUC7L3	O95232	432 aa	Known RBP	16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	TYMP	P19971	482 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	CYP2C18	P33260	490 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	ELF3	P78545	371 aa	Predicted RBP	16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	ADCY1	Q08828	1119 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	SMTNL2	Q2TAL5	461 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	FBXO46	Q6PJ61	603 aa	Predicted RBP	16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	ARC	Q7LC44	396 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	PIK3R5	Q8WYR1	880 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	KCTD13	Q8WZ19	329 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	CCT6B	Q92526	530 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	CENPT	Q96BT3	561 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	ARMC5	Q96C12	935 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	VWCE	Q96DN2	955 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	TMEM209	Q96SK2	561 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	TRIM51	Q9BSJ1	452 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	MED10	Q9BTT4	135 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	C11orf84	Q9BUA3	381 aa	Predicted RBP	16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	ADAM33	Q9BZ11	813 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	PPP1R12C	Q9BZL4	782 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	TMLHE	Q9NVH6	421 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	ASNSD1	Q9NWL6	643 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	DDX56	Q9NY93	547 aa	Known RBP	16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	SLC12A6	Q9UHW9	1150 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	TBX21	Q9UL17	535 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	CORO1C	Q9ULV4	474 aa	Predicted RBP	16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	C15orf41	Q9Y2V0	281 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	PATJ	Q8NI35	1801 aa		16.07	■□□□□ 0.16
DDX39A-209	ENST00000589318	RNF8	O76064	485 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	TRUB2	O95900	331 aa	Known RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	FAM200B	P0CF97	657 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	ECHS1	P30084	290 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	PTPN7	P35236	360 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	COIL	P38432	576 aa	Predicted RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	CDKN2B	P42772	138 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	MAP3K7CL	P57077	242 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	DR1	Q01658	176 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	ADIG	Q0VDE8	80 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	MTMR3	Q13615	1198 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	DHX34	Q14147	1143 aa	Known RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	CCDC38	Q502W7	563 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	INTS6L	Q5JSJ4	861 aa	Known RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	KCNT1	Q5JUK3	1230 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	OVOS1	Q6IE37	1185 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	CCDC137	Q6PK04	289 aa	Known RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	SPOCD1	Q6ZMY3	1216 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	LRRTM3	Q86VH5	581 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	METTL23	Q86XA0	190 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	ANKS4B	Q8N8V4	417 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	C1orf54	Q8WWF1	131 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	SPDL1	Q96EA4	605 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	ZWILCH	Q9H900	591 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	CHST7	Q9NS84	486 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	CPSF2	Q9P2I0	782 aa	Known RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	PCSK1N	Q9UHG2	260 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	USP18	Q9UMW8	372 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	PCDHB8	Q9UN66	801 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	PCDHB7	Q9Y5E2	793 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	SNUPN	O95149	360 aa	Known RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	KRT7	P08729	469 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	HSPA8	P11142	646 aa	Known RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	KRT10	P13645	584 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	TFE3	P19532	575 aa	Predicted RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	OR1G1	P47890	313 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	RABGGTB	P53611	331 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	COPS2	P61201	443 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	RNASEL	Q05823	741 aa	Known RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	CUL1	Q13616	776 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	E2F5	Q15329	346 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	PDCD2	Q16342	344 aa	Predicted RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	TAZ	Q16635	292 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	HADH	Q16836	314 aa	Known RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	JAML	Q86YT9	394 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	MAIP1	Q8WWC4	291 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	ATG4A	Q8WYN0	398 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	MYLPF	Q96A32	169 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	KCNK16	Q96T55	309 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	RHOBTB2	Q9BYZ6	727 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	NRDE2	Q9H7Z3	1164 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	PPAN	Q9NQ55	473 aa	Known RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	NOP53	Q9NZM5	478 aa	Known RBP	16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	HCST	Q9UBK5	93 aa		16.06	■□□□□ 0.16
DDX39A-209	ENST00000589318	hCG_1818297	A0A087WSY0	165 aa		16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	LRRD1	A4D1F6	860 aa		16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	HHLA1	C9JL84	531 aa		16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	AP1G2	O75843	785 aa		16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	PARN	O95453	639 aa	Known RBP	16.05	■□□□□ 0.16
DDX39A-209	ENST00000589318	KCNJ1	P48048	391 aa		16.05	■□□□□ 0.16

Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms