RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 ZNF135P52742 658 aaPredicted RBP6.46□□□□□ -1.38
LIG3-206ENST00000586058 SLC5A3P53794 718 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 CDH6P55285 790 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 DR1Q01658 176 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 GPR17Q13304 367 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 MTA1Q13330 715 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 GPNMBQ14956 572 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 PPP1R7Q15435 360 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 ERCC6LQ2NKX8 1250 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 SMTNL2Q2TAL5 461 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 SLC25A52Q3SY17 297 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 BOLA3Q53S33 107 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 TPGS2Q68CL5 300 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 TMCO3Q6UWJ1 677 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 DENND5BQ6ZUT9 1274 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 ZNF365Q70YC5 407 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 GSTA5Q7RTV2 222 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 SLC13A5Q86YT5 568 aaPredicted RBP6.46□□□□□ -1.38
LIG3-206ENST00000586058 RFX6Q8HWS3 928 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 IFT20Q8IY31 132 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 CCDC105Q8IYK2 499 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 NUP93Q8N1F7 819 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 SLC39A11Q8N1S5 342 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 ELMOD1Q8N336 334 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 STKLD1Q8NE28 680 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 SLC7A14Q8TBB6 771 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 PHOSPHO2Q8TCD6 241 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 CCHCR1Q8TD31 782 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 PIK3R5Q8WYR1 880 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 TSC1Q92574 1164 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 KRT35Q92764 455 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 CD101Q93033 1021 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 FBXO32Q969P5 355 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 HAUS1Q96CS2 278 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 ZNF689Q96CS4 500 aaPredicted RBP6.46□□□□□ -1.38
LIG3-206ENST00000586058 MS4A14Q96JA4 679 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 C8orf48Q96LL4 319 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 SERPINB11Q96P15 392 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 PGLYRP2Q96PD5 576 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 GCNAQ96QF7 691 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 KRT12Q99456 494 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 SMOQ99835 787 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 FRMD8P1Q9BZ68 369 aaPredicted RBP6.46□□□□□ -1.38
LIG3-206ENST00000586058 OSBPL8Q9BZF1 889 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 GPR62Q9BZJ7 368 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 NACA2Q9H009 215 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 ENTPD7Q9NQZ7 604 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 TLR8Q9NR97 1041 aaKnown RBP6.46□□□□□ -1.38
LIG3-206ENST00000586058 RBM12Q9NTZ6 932 aaKnown RBP6.46□□□□□ -1.38
LIG3-206ENST00000586058 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.46□□□□□ -1.38
LIG3-206ENST00000586058 MARCH5Q9NX47 278 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 COX16Q9P0S2 106 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 STIM2Q9P246 746 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 MTRRQ9UBK8 725 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 UXTQ9UBK9 157 aaPredicted RBP6.46□□□□□ -1.38
LIG3-206ENST00000586058 TJP2Q9UDY2 1190 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 PCSK1NQ9UHG2 260 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 TMEM59LQ9UK28 342 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 NME7Q9Y5B8 376 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 BACE2Q9Y5Z0 518 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 CDY1Q9Y6F8 540 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 MRPL42Q9Y6G3 142 aaKnown RBP6.46□□□□□ -1.38
LIG3-206ENST00000586058 CLUHO75153 1309 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 MTMR11A4FU01 709 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 CCDC151A5D8V7 595 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 FAM187AA6NFU0 413 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 GOLGA8CPA6NN73 597 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 F8W810 466 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 H3BRJ5 948 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 M0QYT0 321 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 TULP2O00295 520 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 MCF2LO15068 1137 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 DAPK3O43293 454 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 HEXIM1O94992 359 aaKnown RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 ECEL1O95672 775 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 APOEP02649 317 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 ADH1AP07327 375 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 OR4Q2P0C623 313 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 USP17L7P0C7H9 530 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 SLC2A3P11169 496 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 SYN1P17600 705 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 COL9A1P20849 921 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 CYP2F1P24903 491 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 YWHAQP27348 245 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 MIPP30301 263 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 OR1D2P34982 312 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 PTPN7P35236 360 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 SERPINB6P35237 376 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 MARCKSL1P49006 195 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 RPL34P49207 117 aaKnown RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 FNTAP49354 379 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 YWHAGP61981 247 aaKnown RBP eCLIP6.45□□□□□ -1.38
LIG3-206ENST00000586058 ROR1Q01973 937 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 SLC25A11Q02978 314 aaKnown RBP6.45□□□□□ -1.38
LIG3-206ENST00000586058 CALCOCO2Q13137 446 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 GPS2Q13227 327 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 NME3Q13232 169 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 HLTFQ14527 1009 aaKnown RBP eCLIP6.45□□□□□ -1.38
LIG3-206ENST00000586058 BRD3Q15059 726 aa6.45□□□□□ -1.38
LIG3-206ENST00000586058 TCTN1Q2MV58 587 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms