RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 MYRIPQ8NFW9 859 aa4.39□□□□□ -1.71
SMCHD1-209ENST00000583441 BPIFB1Q8TDL5 484 aa4.39□□□□□ -1.71
SMCHD1-209ENST00000583441 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.39□□□□□ -1.71
SMCHD1-209ENST00000583441 MYLK2Q9H1R3 596 aa4.39□□□□□ -1.71
SMCHD1-209ENST00000583441 UNKLQ9H9P5 680 aaKnown RBP4.39□□□□□ -1.71
SMCHD1-209ENST00000583441 INTS13Q9NVM9 706 aa4.39□□□□□ -1.71
SMCHD1-209ENST00000583441 RGL1Q9NZL6 768 aa4.39□□□□□ -1.71
SMCHD1-209ENST00000583441 DNMT3BQ9UBC3 853 aaKnown RBP4.39□□□□□ -1.71
SMCHD1-209ENST00000583441 DKK4Q9UBT3 224 aa4.39□□□□□ -1.71
SMCHD1-209ENST00000583441 ENTPD2Q9Y5L3 495 aa4.39□□□□□ -1.71
SMCHD1-209ENST00000583441 TRGV11A0A075B6L2 103 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 CCDC78A2IDD5 438 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 F5H697 171 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 RGS10O43665 173 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 TLR5O60602 858 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 COQ9O75208 318 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 RASAL1O95294 804 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 ELANEP08246 267 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 KCNA3P22001 575 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 PDIA3P30101 505 aaKnown RBP4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 PPM1FP49593 454 aaPredicted RBP4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 PDE6CP51160 858 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 VAV2P52735 878 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 POLE2P56282 527 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 MC2RQ01718 297 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 MYO1EQ12965 1108 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 RAB30Q15771 203 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 MAPKAPK3Q16644 382 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 CYP2A13Q16696 494 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 ZNF750Q32MQ0 723 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 TEDDM1Q5T9Z0 273 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 FAXCQ5TGI0 409 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 RRAGBQ5VZM2 374 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 CCDC174Q6PII3 467 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 Q6ZTC4 211 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 RFX8Q6ZV50 586 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 GATAD2AQ86YP4 633 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 FAM9AQ8IZU1 332 aaPredicted RBP4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 CPXCR1Q8N123 301 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 FAM71BQ8TC56 605 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 TRAPPC12Q8WVT3 735 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 FUBP1Q96AE4 644 aaKnown RBP4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 TMEM125Q96AQ2 219 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 LRIG1Q96JA1 1093 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 FAM227BQ96M60 508 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 TRIM5Q9C035 493 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 SMOC2Q9H3U7 446 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 GJB4Q9NTQ9 266 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 TMOD4Q9NZQ9 345 aa4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 NDRG4Q9ULP0 352 aaKnown RBP4.38□□□□□ -1.71
SMCHD1-209ENST00000583441 PPEF2O14830 753 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 NPHP1O15259 732 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 CCNT2O60583 730 aaKnown RBP4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 SRGAP2O75044 1071 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 NDST3O95803 873 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 PRKAR1BP31321 381 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 NSUN2Q08J23 767 aaKnown RBP eCLIP4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 CCNIQ14094 377 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 PTK2BQ14289 1009 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 SPARCL1Q14515 664 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 PFKFB4Q16877 469 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 GEN1Q17RS7 908 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 RBM20Q5T481 1227 aaKnown RBP4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 ARHGAP40Q5TG30 622 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 CRTC1Q6UUV9 634 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 ZNF354CQ86Y25 554 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 CACNA2D3Q8IZS8 1091 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 FAM109AQ8N4B1 249 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 MYCT1Q8N699 235 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 GLIS1Q8NBF1 620 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 FAM136AQ96C01 138 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 ZDHHC12Q96GR4 267 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 PAGR1Q9BTK6 254 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 DACT1Q9NYF0 836 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 VSX1Q9NZR4 365 aaPredicted RBP4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 MDFICQ9P1T7 246 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 WNT6Q9Y6F9 365 aa4.37□□□□□ -1.71
SMCHD1-209ENST00000583441 A0A087WZ62 844 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 LGALS16A8MUM7 142 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 NPC1O15118 1278 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 CD3EAPO15446 510 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 PIP5K1CO60331 668 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 ITGA5P08648 1049 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 HSD3B1P14060 373 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 EPHA3P29320 983 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 SERPINF1P36955 418 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 MTHFSP49914 203 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 ITIH3Q06033 890 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 BIRC3Q13489 604 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 ZIK1Q3SY52 487 aaPredicted RBP4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 TUBB8Q3ZCM7 444 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 CD300EQ496F6 205 aaPredicted RBP4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 RGS7BPQ6MZT1 257 aaPredicted RBP4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 KIAA0408Q6ZU52 694 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 MEPCEQ7L2J0 689 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 ZNF280BQ86YH2 543 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 CCDC28AQ8IWP9 274 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 PPP2R3CQ969Q6 453 aa4.36□□□□□ -1.71
SMCHD1-209ENST00000583441 EID2BQ96D98 161 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms