RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TMC2Q8TDI7 906 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 PAGE5Q96GU1 130 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 KLF16Q9BXK1 252 aaPredicted RBP22.28■■□□□ 1.16
VPS53-216ENST00000574029 TLR8Q9NR97 1041 aaKnown RBP22.28■■□□□ 1.16
VPS53-216ENST00000574029 EXOC1Q9NV70 894 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 WASF3Q9UPY6 502 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 STARD13Q9Y3M8 1113 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 USP24Q9UPU5 2620 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 PDXKO00764 312 aa22.27■■□□□ 1.16
VPS53-216ENST00000574029 ASS1P00966 412 aaKnown RBP22.27■■□□□ 1.16
VPS53-216ENST00000574029 DPP6P42658 865 aa22.27■■□□□ 1.16
VPS53-216ENST00000574029 ASPAP45381 313 aa22.27■■□□□ 1.16
VPS53-216ENST00000574029 KMT5BQ4FZB7 885 aa22.27■■□□□ 1.16
VPS53-216ENST00000574029 PEAR1Q5VY43 1037 aaPredicted RBP22.27■■□□□ 1.16
VPS53-216ENST00000574029 SV2AQ7L0J3 742 aa22.27■■□□□ 1.16
VPS53-216ENST00000574029 C12orf29Q8N999 325 aa22.27■■□□□ 1.16
VPS53-216ENST00000574029 NUSAP1Q9BXS6 441 aaKnown RBP22.27■■□□□ 1.16
VPS53-216ENST00000574029 CYLDQ9NQC7 956 aa22.27■■□□□ 1.16
VPS53-216ENST00000574029 RCOR1Q9UKL0 485 aa22.27■■□□□ 1.16
VPS53-216ENST00000574029 CFAP45Q9UL16 551 aa22.27■■□□□ 1.16
VPS53-216ENST00000574029 MYO18AQ92614 2054 aaKnown RBP22.27■■□□□ 1.16
VPS53-216ENST00000574029 IKBKBO14920 756 aa22.26■■□□□ 1.15
VPS53-216ENST00000574029 TRIM24O15164 1050 aa22.26■■□□□ 1.15
VPS53-216ENST00000574029 TBX18O95935 607 aa22.26■■□□□ 1.15
VPS53-216ENST00000574029 NR3C1P04150 777 aa22.26■■□□□ 1.15
VPS53-216ENST00000574029 PROS1P07225 676 aa22.26■■□□□ 1.15
VPS53-216ENST00000574029 GABRG2P18507 467 aa22.26■■□□□ 1.15
VPS53-216ENST00000574029 C1orf220Q5T0J3 134 aa22.26■■□□□ 1.15
VPS53-216ENST00000574029 LYSMD4Q5XG99 296 aa22.26■■□□□ 1.15
VPS53-216ENST00000574029 SLC23A3Q6PIS1 610 aa22.26■■□□□ 1.15
VPS53-216ENST00000574029 FAM49BQ9NUQ9 324 aa22.26■■□□□ 1.15
VPS53-216ENST00000574029 PILRBQ9UKJ0 227 aa22.26■■□□□ 1.15
VPS53-216ENST00000574029 SCML2Q9UQR0 700 aa22.26■■□□□ 1.15
VPS53-216ENST00000574029 HHLA1C9JL84 531 aa22.25■■□□□ 1.15
VPS53-216ENST00000574029 FAM200BP0CF97 657 aa22.25■■□□□ 1.15
VPS53-216ENST00000574029 HOXB2P14652 356 aa22.25■■□□□ 1.15
VPS53-216ENST00000574029 NTSR1P30989 418 aa22.25■■□□□ 1.15
VPS53-216ENST00000574029 ATP5C1P36542 298 aaKnown RBP22.25■■□□□ 1.15
VPS53-216ENST00000574029 UAP1L1Q3KQV9 507 aa22.25■■□□□ 1.15
VPS53-216ENST00000574029 GRAMD4Q6IC98 578 aa22.25■■□□□ 1.15
VPS53-216ENST00000574029 SPOPLQ6IQ16 392 aa22.25■■□□□ 1.15
VPS53-216ENST00000574029 GPRIN1Q7Z2K8 1008 aa22.25■■□□□ 1.15
VPS53-216ENST00000574029 MIB1Q86YT6 1006 aa22.25■■□□□ 1.15
VPS53-216ENST00000574029 HNRNPABQ99729 332 aaKnown RBP22.25■■□□□ 1.15
VPS53-216ENST00000574029 DNAJC17Q9NVM6 304 aaKnown RBP22.25■■□□□ 1.15
VPS53-216ENST00000574029 OSER1Q9NX31 292 aa22.25■■□□□ 1.15
VPS53-216ENST00000574029 MARK1Q9P0L2 795 aa22.25■■□□□ 1.15
VPS53-216ENST00000574029 CACNA1GO43497 2377 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 ZFHX4Q86UP3 3567 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 A0A1W2PQF6 199 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 AP5Z1O43299 807 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 CACNG3O60359 315 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 ENGP17813 658 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 ITPKAP23677 461 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 ADORA2BP29275 332 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 HOXD12P35452 270 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 DNM1Q05193 864 aaKnown RBP22.24■■□□□ 1.15
VPS53-216ENST00000574029 INCA1Q0VD86 236 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 FOXC1Q12948 553 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 CLEC20AQ6ZU45 233 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 XPO6Q96QU8 1125 aaKnown RBP22.24■■□□□ 1.15
VPS53-216ENST00000574029 CD248Q9HCU0 757 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 CALCOCO1Q9P1Z2 691 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 WDR35Q9P2L0 1181 aa22.24■■□□□ 1.15
VPS53-216ENST00000574029 NEDD8-MDP1E9PL57 170 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 MAPK13O15264 365 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 CYP26A1O43174 497 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 HLA-DRAP01903 254 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 TYRP14679 529 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 TRIM21P19474 475 aaKnown RBP22.23■■□□□ 1.15
VPS53-216ENST00000574029 PIK3CAP42336 1068 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 WASP42768 502 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 GOLGA8FQ08AF8 430 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 GOLGA8DPQ0D2H9 430 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 EGFLAMQ63HQ2 1017 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 CEP135Q66GS9 1140 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 KLHDC10Q6PID8 442 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 SLC36A4Q6YBV0 504 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 DEFB124Q8NES8 71 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 TWNKQ96RR1 684 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 BBS2Q9BXC9 721 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 NMUR1Q9HB89 426 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 PNPLA8Q9NP80 782 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 LSM7Q9UK45 103 aaKnown RBP22.23■■□□□ 1.15
VPS53-216ENST00000574029 TRAF3IP3Q9Y228 551 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 FRMD4BQ9Y2L6 1034 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 PCDHA5Q9Y5H7 936 aa22.23■■□□□ 1.15
VPS53-216ENST00000574029 ATXN2Q99700 1313 aaKnown RBP22.23■■□□□ 1.15
VPS53-216ENST00000574029 C1QTNF9BB2RNN3 333 aa22.22■■□□□ 1.15
VPS53-216ENST00000574029 MYL1P05976 194 aa22.22■■□□□ 1.15
VPS53-216ENST00000574029 C1QTNF9P0C862 333 aa22.22■■□□□ 1.15
VPS53-216ENST00000574029 MAPK8P45983 427 aa22.22■■□□□ 1.15
VPS53-216ENST00000574029 VAMP7P51809 220 aa22.22■■□□□ 1.15
VPS53-216ENST00000574029 RPL6Q02878 288 aaKnown RBP22.22■■□□□ 1.15
VPS53-216ENST00000574029 PKP1Q13835 747 aa22.22■■□□□ 1.15
VPS53-216ENST00000574029 UNQ6494/PRO21346Q6UXR6 183 aa22.22■■□□□ 1.15
VPS53-216ENST00000574029 TPGS1Q6ZTW0 290 aa22.22■■□□□ 1.15
VPS53-216ENST00000574029 CYFIP2Q96F07 1278 aa22.22■■□□□ 1.15
VPS53-216ENST00000574029 ACOX2Q99424 681 aa22.22■■□□□ 1.15
VPS53-216ENST00000574029 GABRG3Q99928 467 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms