RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CLEC20AQ6ZU45 233 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 PAQR9Q6ZVX9 377 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 TADA2BQ86TJ2 420 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 KIAA1958Q8N8K9 716 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 MLKLQ8NB16 471 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 WHAMMQ8TF30 809 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 SLC22A12Q96S37 553 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 SMOQ99835 787 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 FAM83CQ9BQN1 747 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 SRRTQ9BXP5 876 aaKnown RBP8.55□□□□□ -1.04
VPS53-214ENST00000572607 DUSP16Q9BY84 665 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 CSNK1G1Q9HCP0 422 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 PNPLA8Q9NP80 782 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 TMEM30AQ9NV96 361 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 SMPD4Q9NXE4 827 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 GMIPQ9P107 970 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 HESX1Q9UBX0 185 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 CHORDC1Q9UHD1 332 aaPredicted RBP8.55□□□□□ -1.04
VPS53-214ENST00000572607 FBXO4Q9UKT5 387 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 SH3BP1Q9Y3L3 701 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 WNT6Q9Y6F9 365 aa8.55□□□□□ -1.04
VPS53-214ENST00000572607 MAP1BP46821 2468 aaKnown RBP8.54□□□□□ -1.04
VPS53-214ENST00000572607 FAM92AA1XBS5 289 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 TNFRSF10BO14763 440 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 WFS1O76024 890 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 OLFM2O95897 454 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 OAS1P00973 400 aaKnown RBP8.54□□□□□ -1.04
VPS53-214ENST00000572607 CHRNB1P11230 501 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 ACO1P21399 889 aaKnown RBP8.54□□□□□ -1.04
VPS53-214ENST00000572607 RAD23BP54727 409 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 CSTF1Q05048 431 aaKnown RBP8.54□□□□□ -1.04
VPS53-214ENST00000572607 KCNH2Q12809 1159 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 PON2Q15165 354 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 SGO2Q562F6 1265 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 PPP1R26Q5T8A7 1209 aaPredicted RBP8.54□□□□□ -1.04
VPS53-214ENST00000572607 TXNDC11Q6PKC3 985 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 FAM114A1Q8IWE2 563 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 ARHGAP18Q8N392 663 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 PPM1KQ8N3J5 372 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 SYNPOQ8N3V7 929 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 SLC4A11Q8NBS3 891 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 ZMIZ2Q8NF64 920 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 CCDC26Q8TAB7 109 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 SCAMP5Q8TAC9 235 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 MRGPRX2Q96LB1 330 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 FAM81BQ96LP2 452 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 CDK5RAP1Q96SZ6 601 aaKnown RBP8.54□□□□□ -1.04
VPS53-214ENST00000572607 ARID3AQ99856 593 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 P2RY13Q9BPV8 354 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 CHRDQ9H2X0 955 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 ECT2Q9H8V3 914 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 HPS4Q9NQG7 708 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 DLL3Q9NYJ7 618 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 IL37Q9NZH6 218 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 CFAP97Q9P2B7 532 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 KIAA1257Q9ULG3 409 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 SCML2Q9UQR0 700 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 PCDHB4Q9Y5E5 795 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 R4GN57 208 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 ACACBO00763 2458 aa8.54□□□□□ -1.04
VPS53-214ENST00000572607 NUP210Q8TEM1 1887 aaPredicted RBP8.53□□□□□ -1.04
VPS53-214ENST00000572607 COCHO43405 550 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 TLR5O60602 858 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 ATG13O75143 517 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 BEST1O76090 585 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 ADH1CP00326 375 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 PAEPP09466 180 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 SP9P0CG40 484 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 RALAP11233 206 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 VDRP11473 427 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 ARSAP15289 507 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 DRD1P21728 446 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 GJA4P35212 333 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 ATP5C1P36542 298 aaKnown RBP8.53□□□□□ -1.04
VPS53-214ENST00000572607 MTIF2P46199 727 aaKnown RBP8.53□□□□□ -1.04
VPS53-214ENST00000572607 CXCL12P48061 93 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 BCAT1P54687 386 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 NRLP54845 237 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 MARSP56192 900 aaKnown RBP8.53□□□□□ -1.04
VPS53-214ENST00000572607 MTAPQ13126 283 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 GOLGA7BQ2TAP0 167 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 EML3Q32P44 896 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 ZNF528Q3MIS6 628 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 SNX30Q5VWJ9 437 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 TMEM270Q6UE05 265 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 CLEC17AQ6ZS10 378 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 TRIM59Q8IWR1 403 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 MAML2Q8IZL2 1156 aaPredicted RBP8.53□□□□□ -1.04
VPS53-214ENST00000572607 SPEM1Q8N4L4 309 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 ANKRD52Q8NB46 1076 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 EHBP1Q8NDI1 1231 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 RIN3Q8TB24 985 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 ATRIPQ8WXE1 791 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 CD101Q93033 1021 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 CNOT6LQ96LI5 555 aaKnown RBP8.53□□□□□ -1.04
VPS53-214ENST00000572607 IPO9Q96P70 1041 aaKnown RBP8.53□□□□□ -1.04
VPS53-214ENST00000572607 UBXN6Q9BZV1 441 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 RNF38Q9H0F5 515 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 SEMA4AQ9H3S1 761 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 CCSER2Q9H7U1 834 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms