RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SLC5A9Q2M3M2 681 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 ZNF528Q3MIS6 628 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 PM20D1Q6GTS8 502 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 MTSS1LQ765P7 747 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 TADA2BQ86TJ2 420 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 NPAS3Q8IXF0 933 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 DRC7Q8IY82 874 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 MAML2Q8IZL2 1156 aaPredicted RBP21.64■■□□□ 1.05
VPS53-210ENST00000571456 SHKBP1Q8TBC3 707 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 IRGQQ8WZA9 623 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 DDX1Q92499 740 aaKnown RBP21.64■■□□□ 1.05
VPS53-210ENST00000571456 CDK5RAP1Q96SZ6 601 aaKnown RBP21.64■■□□□ 1.05
VPS53-210ENST00000571456 TRIM62Q9BVG3 475 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 TASP1Q9H6P5 420 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 ARHGEF3Q9NR81 526 aa21.64■■□□□ 1.05
VPS53-210ENST00000571456 NUP210Q8TEM1 1887 aaPredicted RBP21.64■■□□□ 1.05
VPS53-210ENST00000571456 GYPCP04921 128 aa21.63■■□□□ 1.05
VPS53-210ENST00000571456 ZDHHC11BP0C7U3 371 aa21.63■■□□□ 1.05
VPS53-210ENST00000571456 LAMP2P13473 410 aa21.63■■□□□ 1.05
VPS53-210ENST00000571456 CCR2P41597 374 aa21.63■■□□□ 1.05
VPS53-210ENST00000571456 TKTL1P51854 596 aa21.63■■□□□ 1.05
VPS53-210ENST00000571456 USP46P62068 366 aa21.63■■□□□ 1.05
VPS53-210ENST00000571456 TSR1Q2NL82 804 aaKnown RBP21.63■■□□□ 1.05
VPS53-210ENST00000571456 IRF2BP2Q7Z5L9 587 aa21.63■■□□□ 1.05
VPS53-210ENST00000571456 NOP9Q86U38 636 aaKnown RBP21.63■■□□□ 1.05
VPS53-210ENST00000571456 SCAMP5Q8TAC9 235 aa21.63■■□□□ 1.05
VPS53-210ENST00000571456 ITFG1Q8TB96 612 aa21.63■■□□□ 1.05
VPS53-210ENST00000571456 IPO4Q8TEX9 1081 aaKnown RBP21.63■■□□□ 1.05
VPS53-210ENST00000571456 SLC4A5Q9BY07 1137 aa21.63■■□□□ 1.05
VPS53-210ENST00000571456 ACP6Q9NPH0 428 aa21.63■■□□□ 1.05
VPS53-210ENST00000571456 ZNF840PA6NDX5 716 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 MOSPD3O75425 235 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 ZBED1O96006 694 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 GLULP15104 373 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 ZNF75DP51815 510 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 PMF1Q6P1K2 205 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 DENND1BQ6P3S1 775 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 TMEM150AQ86TG1 271 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 TMEM110Q86TL2 294 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 ZDHHC17Q8IUH5 632 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 CNGA4Q8IV77 575 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 PJA1Q8NG27 643 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 CLIC5Q9NZA1 410 aa21.62■■□□□ 1.05
VPS53-210ENST00000571456 CEBPBP17676 345 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 HNRNPH3P31942 346 aaKnown RBP21.61■■□□□ 1.05
VPS53-210ENST00000571456 PDCLQ13371 301 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 COL9A2Q14055 689 aaPredicted RBP21.61■■□□□ 1.05
VPS53-210ENST00000571456 ARID5BQ14865 1188 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 TEAD2Q15562 447 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 GPR158Q5T848 1215 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 GPRIN1Q7Z2K8 1008 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 VPS36Q86VN1 386 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 TCEAL4Q96EI5 215 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 AGPAT1Q99943 283 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 SLITRK6Q9H5Y7 841 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 KIF9Q9HAQ2 790 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 TRPV4Q9HBA0 871 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 ST7Q9NRC1 585 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 OBP2AQ9NY56 170 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 RALYQ9UKM9 306 aaKnown RBP21.61■■□□□ 1.05
VPS53-210ENST00000571456 FBXO4Q9UKT5 387 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 PCDHGA2Q9Y5H1 932 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 CEP295Q9C0D2 2601 aa21.61■■□□□ 1.05
VPS53-210ENST00000571456 TRAV19A0A0A6YYK7 116 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 TADA3O75528 432 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 CYP1A1P04798 512 aaPredicted RBP21.6■■□□□ 1.05
VPS53-210ENST00000571456 RALAP11233 206 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 CASP14P31944 242 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 AVPR1AP37288 418 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 ARID5AQ03989 594 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 KLHL30Q0D2K2 578 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 ADIGQ0VDE8 80 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 IFRD2Q12894 506 aaPredicted RBP21.6■■□□□ 1.05
VPS53-210ENST00000571456 ZNF268Q14587 947 aaPredicted RBP21.6■■□□□ 1.05
VPS53-210ENST00000571456 HECTD3Q5T447 861 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 KLHDC10Q6PID8 442 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 KIAA1958Q8N8K9 716 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 OR8K1Q8NGG5 319 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 ATRIPQ8WXE1 791 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 GOLGA1Q92805 767 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 SMARCD2Q92925 531 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 PPP1R13BQ96KQ4 1090 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 MYADMQ96S97 322 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 FOXQ1Q9C009 403 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 ZNHIT6Q9NWK9 470 aaKnown RBP21.6■■□□□ 1.05
VPS53-210ENST00000571456 USP18Q9UMW8 372 aa21.6■■□□□ 1.05
VPS53-210ENST00000571456 TULP2O00295 520 aa21.59■■□□□ 1.05
VPS53-210ENST00000571456 CALCAP01258 141 aa21.59■■□□□ 1.05
VPS53-210ENST00000571456 SERPING1P05155 500 aa21.59■■□□□ 1.05
VPS53-210ENST00000571456 GLI1P08151 1106 aa21.59■■□□□ 1.05
VPS53-210ENST00000571456 MMEP08473 750 aa21.59■■□□□ 1.05
VPS53-210ENST00000571456 USP17L7P0C7H9 530 aa21.59■■□□□ 1.05
VPS53-210ENST00000571456 CDC25BP30305 580 aa21.59■■□□□ 1.05
VPS53-210ENST00000571456 FMO1Q01740 532 aa21.59■■□□□ 1.05
VPS53-210ENST00000571456 TAF3Q5VWG9 929 aa21.59■■□□□ 1.05
VPS53-210ENST00000571456 BEND5Q7L4P6 421 aa21.59■■□□□ 1.05
VPS53-210ENST00000571456 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.59■■□□□ 1.05
VPS53-210ENST00000571456 CMTM8Q8IZV2 173 aa21.59■■□□□ 1.05
VPS53-210ENST00000571456 C1orf131Q8NDD1 294 aaKnown RBP21.59■■□□□ 1.05
VPS53-210ENST00000571456 CPLX3Q8WVH0 158 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms