RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TPGS1Q6ZTW0 290 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 GPBP1Q86WP2 473 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 BBS7Q8IWZ6 715 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 FAM181AQ8N9Y4 354 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 PDZD8Q8NEN9 1154 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 FBXO18Q8NFZ0 1043 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 RASSF8Q8NHQ8 419 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 FBXO32Q969P5 355 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 SIPA1Q96FS4 1042 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 REEP2Q9BRK0 252 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 TTLL2Q9BWV7 592 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 ITM2CQ9NQX7 267 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.77□□□□□ -0.534e-6■■■■■ 72.1
VPS53-207ENST00000570510 GDAP2Q9NXN4 497 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 GMIPQ9P107 970 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 WDR35Q9P2L0 1181 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 ITGA11Q9UKX5 1188 aa11.77□□□□□ -0.53
VPS53-207ENST00000570510 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.77□□□□□ -0.53
VPS53-207ENST00000570510 WASH3PC4AMC7 463 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 GABRDO14764 452 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 OLFM2O95897 454 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 TMEM191BP0C7N4 346 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 TYRP14679 529 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 YWHAQP27348 245 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 PRPHP41219 470 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 DGKGP49619 791 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 TPMTP51580 245 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 GOLGA8FQ08AF8 430 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 GOLGA8DPQ0D2H9 430 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 PTPRNQ16849 979 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 KIF19Q2TAC6 998 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 DPH6Q7L8W6 267 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 METTL3Q86U44 580 aaKnown RBP11.76□□□□□ -0.53
VPS53-207ENST00000570510 FAM124AQ86V42 546 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 OSTM1Q86WC4 334 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 TMPRSS6Q8IU80 811 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 LURAP1LQ8IV03 231 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 FAM184AQ8NB25 1140 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 MMS19Q96T76 1030 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 LGMNQ99538 433 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 FAM213AQ9BRX8 229 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 SNX25Q9H3E2 840 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 DNMT3LQ9UJW3 386 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 ANKRD6Q9Y2G4 727 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 SNX11Q9Y5W9 270 aa11.76□□□□□ -0.53
VPS53-207ENST00000570510 B8ZZF3 427 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 TISP43B9A030 160 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 PYCARD-AS1I3L0S3 204 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 KCNK3O14649 394 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 COCHO43405 550 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 SLC28A2O43868 658 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 RTN3O95197 1032 aaPredicted RBP11.75□□□□□ -0.53
VPS53-207ENST00000570510 LMO2P25791 158 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 IL12RB1P42701 662 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 ZNF132P52740 706 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 C21orf59P57076 290 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 GTF2BQ00403 316 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 IL9RQ01113 521 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 BNC1Q01954 994 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 RHDQ02161 417 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 TARDBPQ13148 414 aaKnown RBP eCLIP11.75□□□□□ -0.53
VPS53-207ENST00000570510 E2F5Q15329 346 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 SOWAHAQ2M3V2 549 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 FUT11Q495W5 492 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 ARSHQ5FYA8 562 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 MDH1BQ5I0G3 518 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 CACUL1Q86Y37 369 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 C1orf127Q8N9H9 656 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 UCMAQ8WVF2 138 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 IGSF8Q969P0 613 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 PCED1BQ96HM7 432 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 TMEM176AQ96HP8 235 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 C8orf48Q96LL4 319 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 MMTAG2Q9BU76 263 aaKnown RBP11.75□□□□□ -0.53
VPS53-207ENST00000570510 NRSN2Q9GZP1 204 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 USP36Q9P275 1121 aaKnown RBP11.75□□□□□ -0.53
VPS53-207ENST00000570510 CHORDC1Q9UHD1 332 aaPredicted RBP11.75□□□□□ -0.53
VPS53-207ENST00000570510 LSM7Q9UK45 103 aaKnown RBP11.75□□□□□ -0.53
VPS53-207ENST00000570510 HCN2Q9UL51 889 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 PCDHGA1Q9Y5H4 931 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 STON1Q9Y6Q2 735 aa11.75□□□□□ -0.53
VPS53-207ENST00000570510 HELZP42694 1942 aaKnown RBP11.75□□□□□ -0.53
VPS53-207ENST00000570510 MYO18AQ92614 2054 aaKnown RBP11.75□□□□□ -0.53
VPS53-207ENST00000570510 MYH11P35749 1972 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 PRRT4C9JH25 899 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 ENC1O14682 589 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 PCDHGA12O60330 932 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 CACNG3O60359 315 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 DFNA5O60443 496 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 RFPL3O75679 317 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 WISP1O95388 367 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 LDOC1O95751 146 aaPredicted RBP11.74□□□□□ -0.53
VPS53-207ENST00000570510 LDHAP00338 332 aaKnown RBP11.74□□□□□ -0.53
VPS53-207ENST00000570510 C1SP09871 688 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 ABCB4P21439 1286 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 CDH8P55286 799 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 ARID5AQ03989 594 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 TLE3Q04726 772 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 ST3GAL1Q11201 340 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 KCNH2Q12809 1159 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms