RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ZBED1O96006 694 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 LCP1P13796 627 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 CCDC130P13994 396 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 ITIH2P19823 946 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 FGFR3P22607 806 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 KDELR1P24390 212 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 MIPP30301 263 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 STIP1P31948 543 aaKnown RBP8.32□□□□□ -1.08
VPS39-213ENST00000570062 SSTR3P32745 418 aaPredicted RBP8.32□□□□□ -1.08
VPS39-213ENST00000570062 HTR7P34969 479 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 RGS7P49802 495 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 AFF1P51825 1210 aaKnown RBP8.32□□□□□ -1.08
VPS39-213ENST00000570062 TKTL1P51854 596 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 MAP3K7CLP57077 242 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 RNASE9P60153 205 aaKnown RBP8.32□□□□□ -1.08
VPS39-213ENST00000570062 VSNL1P62760 191 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 GUCY2DQ02846 1103 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 KLF1Q13351 362 aaPredicted RBP8.32□□□□□ -1.08
VPS39-213ENST00000570062 ZNF211Q13398 564 aaPredicted RBP8.32□□□□□ -1.08
VPS39-213ENST00000570062 MTMR3Q13615 1198 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 KRT81Q14533 505 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 GPNMBQ14956 572 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 TAZQ16635 292 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 USP41Q3LFD5 358 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 CCDC14Q49A88 953 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 C2CD6Q53TS8 623 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 BEND6Q5SZJ8 279 aaPredicted RBP8.32□□□□□ -1.08
VPS39-213ENST00000570062 ERMARDQ5T6L9 678 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 DCAF12L1Q5VU92 463 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 PM20D1Q6GTS8 502 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 MFSD5Q6N075 450 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 CD300LGQ6UXG3 332 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 ZNF365Q70YC5 407 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 PDZD4Q76G19 769 aaPredicted RBP8.32□□□□□ -1.08
VPS39-213ENST00000570062 PCGF5Q86SE9 256 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 PHLDB2Q86SQ0 1253 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 CROCCP2Q86T23 111 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 TADA2BQ86TJ2 420 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 PRELID2Q8N945 189 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 LRRN4CLQ8ND94 238 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 C3orf58Q8NDZ4 430 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 JOSD2Q8TAC2 188 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.32□□□□□ -1.08
VPS39-213ENST00000570062 CAVIN3Q969G5 261 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 TOP1MTQ969P6 601 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 NT5C3BQ969T7 300 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 MYLPFQ96A32 169 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 C8orf48Q96LL4 319 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 SLITRK1Q96PX8 696 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 SLC2A13Q96QE2 648 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 ZNF670Q9BS34 389 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 NRDE2Q9H7Z3 1164 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 EPB41L5Q9HCM4 733 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 CRTAC1Q9NQ79 661 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 KRT82Q9NSB4 513 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 MTRF1LQ9UGC7 380 aaKnown RBP8.32□□□□□ -1.08
VPS39-213ENST00000570062 CHORDC1Q9UHD1 332 aaPredicted RBP8.32□□□□□ -1.08
VPS39-213ENST00000570062 BACE2Q9Y5Z0 518 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 CFAP69A5D8W1 941 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 TBKBP1A7MCY6 615 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 RAD51CO43502 376 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 DGKIO75912 1065 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 RTN3O95197 1032 aaPredicted RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 ITGAVP06756 1048 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 GALTP07902 379 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 RARAP10276 462 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 RALAP11233 206 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 RAG1P15918 1043 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 LAG3P18627 525 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 TGM2P21980 687 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 ACAT1P24752 427 aaKnown RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 PPM1AP35813 382 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 CDKN2BP42772 138 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 BRCC3P46736 316 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 NR2C2P49116 596 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 TUFMP49411 452 aaKnown RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 CCL23P55773 120 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 DAOAP59103 153 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 TAS2R40P59535 323 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 RPL10AP62906 217 aaKnown RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 OGDHQ02218 1023 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 SLC25A11Q02978 314 aaKnown RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 ZNF252P-AS1Q0IIN9 211 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 CALCOCO2Q13137 446 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 GPR17Q13304 367 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 NAA30Q147X3 362 aaPredicted RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 SLMAPQ14BN4 828 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 PPP1R7Q15435 360 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 CTXN3Q4LDR2 81 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 CFAP58Q5T655 872 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 ALS2CLQ60I27 953 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 PAQR9Q6ZVX9 377 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 BBS12Q6ZW61 710 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 RETREG3Q86VR2 466 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 ZNF280BQ86YH2 543 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 CMTR2Q8IYT2 770 aaKnown RBP8.31□□□□□ -1.08
VPS39-213ENST00000570062 CNPY4Q8N129 248 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 FAM71BQ8TC56 605 aa8.31□□□□□ -1.08
VPS39-213ENST00000570062 FAM172AQ8WUF8 416 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms