RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 AKT3Q9Y243 479 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 DRG1Q9Y295 367 aaKnown RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 NUB1Q9Y5A7 615 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 UBR2Q8IWV8 1755 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 A6NHS1 94 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 SMAPO00193 183 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 TM7SF2O76062 418 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 MT-CO1P00395 513 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 HSPA8P11142 646 aaKnown RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 VCLP18206 1134 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 PEX2P28328 305 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 RBL1P28749 1068 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 GALK1P51570 392 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 PLOD1Q02809 727 aaPredicted RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 FAM47CQ5HY64 1035 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 HABP4Q5JVS0 413 aaKnown RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 TDRD10Q5VZ19 366 aaKnown RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 FAM160B1Q5W0V3 765 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 KLC3Q6P597 504 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 TRIM67Q6ZTA4 783 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 KDELC2Q7Z4H8 507 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 PTAR1Q7Z6K3 402 aaPredicted RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 NCAPG2Q86XI2 1143 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 MAP4K3Q8IVH8 894 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 ZNF786Q8N393 782 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 C7orf43Q8WVR3 580 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 ZNF669Q96BR6 464 aaPredicted RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 VCPIP1Q96JH7 1222 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 SERAC1Q96JX3 654 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 CATSPER2Q96P56 530 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 MIPEPQ99797 713 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 GPR88Q9GZN0 384 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 PFDN4Q9NQP4 134 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 ATXN10Q9UBB4 475 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 SLC7A8Q9UHI5 535 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 CICQ96RK0 1608 aaPredicted RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 STRNO43815 780 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 KDELR1P24390 212 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 RGS2P41220 211 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 ALDH1A3P47895 512 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 ITKQ08881 620 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 SURF1Q15526 300 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 UGCGQ16739 394 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 EFHC2Q5JST6 749 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 RNASEH2BQ5TBB1 312 aaKnown RBP11.79□□□□□ -0.52
CLN3-238ENST00000569430 CGB2Q6NT52 195 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 C16orf89Q6UX73 402 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 C4orf19Q8IY42 314 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 LRRC71Q8N4P6 559 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 PLEKHO2Q8TD55 490 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 JADE3Q92613 823 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 MPHOSPH6Q99547 160 aaKnown RBP11.79□□□□□ -0.52
CLN3-238ENST00000569430 MED10Q9BTT4 135 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 DRC3Q9H069 523 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 RNPEPQ9H4A4 650 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 SLC39A10Q9ULF5 831 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 ARHGEF37A1IGU5 675 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 TCEA3O75764 348 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 FAM58BPP0C7Q3 252 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 CPA3P15088 417 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 GPD1P21695 349 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 FGFR3P22607 806 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 TXNRD3NBQ6F5E7 133 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 B3GNT6Q6ZMB0 384 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 BNC2Q6ZN30 1099 aaPredicted RBP11.79□□□□□ -0.52
CLN3-238ENST00000569430 LPCAT2Q7L5N7 544 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 SNX32Q86XE0 403 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 OR5B17Q8NGF7 314 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 DIS3LQ8TF46 1054 aaKnown RBP11.79□□□□□ -0.52
CLN3-238ENST00000569430 CRAMP1Q96RY5 1269 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 MMP19Q99542 508 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 MMADHCQ9H3L0 296 aaPredicted RBP11.79□□□□□ -0.52
CLN3-238ENST00000569430 QTRT2Q9H974 415 aaKnown RBP11.79□□□□□ -0.52
CLN3-238ENST00000569430 ACSS2Q9NR19 701 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 MID2Q9UJV3 735 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 CNTNAP4Q9C0A0 1308 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 GLRA3O75311 464 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 MTA2O94776 668 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 ITGAVP06756 1048 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 LCP1P13796 627 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 SERPINB8P50452 374 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 CDK7P50613 346 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 GDF10P55107 478 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 SPDYAQ5MJ70 313 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 RSBN1LQ6PCB5 846 aaPredicted RBP11.79□□□□□ -0.52
CLN3-238ENST00000569430 PDZD4Q76G19 769 aaPredicted RBP11.79□□□□□ -0.52
CLN3-238ENST00000569430 ANKS1BQ7Z6G8 1248 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 HACE1Q8IYU2 909 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 GMCL1P1Q8NEA9 526 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 CYGBQ8WWM9 190 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 RXFP2Q8WXD0 754 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 ETNK2Q9NVF9 386 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 MYH1P12882 1939 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 MYH4Q9Y623 1939 aa11.79□□□□□ -0.52
CLN3-238ENST00000569430 OAS1P00973 400 aaKnown RBP11.78□□□□□ -0.52
CLN3-238ENST00000569430 T-ENOLP0DO92 83 aa11.78□□□□□ -0.52
CLN3-238ENST00000569430 GNAZP19086 355 aa11.78□□□□□ -0.52
CLN3-238ENST00000569430 ADORA2BP29275 332 aa11.78□□□□□ -0.52
CLN3-238ENST00000569430 ABCD1P33897 745 aa11.78□□□□□ -0.52
CLN3-238ENST00000569430 AQP4P55087 323 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms