RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 RCAN1P53805 252 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 HSD17B7P56937 341 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 EVCP57679 992 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 KRT83P78385 493 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 GBE1Q04446 702 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 LRMPQ12912 555 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 MYO1EQ12965 1108 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 RIPK1Q13546 671 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 ADRM1Q16186 407 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 C15orf59Q2T9L4 293 aaPredicted RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 TUBB8Q3ZCM7 444 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 ANKDD1AQ495B1 522 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 ACCSLQ4AC99 568 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 TOR2AQ5JU69 321 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 TMTC4Q5T4D3 741 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 RNF187Q5TA31 235 aaPredicted RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 IL23RQ5VWK5 629 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 ABHD15Q6UXT9 468 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 CYP26C1Q6V0L0 522 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 INTS8Q75QN2 995 aaKnown RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 RSRC2Q7L4I2 434 aaKnown RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 TAS1R1Q7RTX1 841 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 PLA2G4DQ86XP0 818 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 LYSMD2Q8IV50 215 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 ITPRIPQ8IWB1 547 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 CCAR2Q8N163 923 aaKnown RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 GLB1L3Q8NCI6 653 aaPredicted RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 DYDC1Q8WWB3 177 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 AUTS2Q8WXX7 1259 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 IRGQQ8WZA9 623 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 ST8SIA2Q92186 375 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 KIFAP3Q92845 792 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 PEX13Q92968 403 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 SH3KBP1Q96B97 665 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 GIMAP5Q96F15 307 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 RAX2Q96IS3 184 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 CLMNQ96JQ2 1002 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 RBM14Q96PK6 669 aaKnown RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 FAM193BQ96PV7 902 aaPredicted RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 FNBP1Q96RU3 617 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 BPIFA3Q9BQP9 254 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 NAA15Q9BXJ9 866 aaKnown RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 FAM126AQ9BYI3 521 aaPredicted RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 BRINP2Q9C0B6 783 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 KLHL4Q9C0H6 718 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 FAM192AQ9GZU8 254 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 CLSTN2Q9H4D0 955 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 SERHL2Q9H4I8 314 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 PLEKHA4Q9H4M7 779 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 VIPAS39Q9H9C1 493 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 CD93Q9NPY3 652 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 MRGBPQ9NV56 204 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.46□□□□□ -1.86
VPS35-208ENST00000568612 PARPBPQ9NWS1 579 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 AURKAIP1Q9NWT8 199 aaPredicted RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 EURLQ9NYK6 297 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 SRRDQ9UH36 339 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 ZNF180Q9UJW8 692 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 FBXL5Q9UKA1 691 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 HDAC9Q9UKV0 1011 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 TRAF3IP3Q9Y228 551 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 MRPL11Q9Y3B7 192 aaKnown RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 FAM32AQ9Y421 112 aaKnown RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 FADS3Q9Y5Q0 445 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 POLR3AO14802 1390 aaPredicted RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 NRXN1Q9ULB1 1477 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 TIAM1Q13009 1591 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 BCL9O00512 1426 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 CUX1P39880 1505 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 USP27XA6NNY8 438 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 AKR1B15C9JRZ8 316 aaPredicted RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 SPECC1L-ADORA2AF8WAN1 911 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 AP3B1O00203 1094 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 IFRD1O00458 451 aaPredicted RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 KMOO15229 486 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 GPR39O43194 453 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 AP5Z1O43299 807 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 HOXA3O43365 443 aaPredicted RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 RASA4O43374 803 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 FAM20BO75063 409 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 FZD7O75084 574 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 ITGA10O75578 1167 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 RPS6KA4O75676 772 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 ZNF202O95125 648 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 ATP6V1G2O95670 118 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 EIF2S1P05198 315 aaKnown RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 GSTA2P09210 222 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 CLTAP09496 248 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 TOP1P11387 765 aaKnown RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 CPA3P15088 417 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 PTPN2P17706 415 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 KRT4P19013 534 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 ADSLP30566 484 aaPredicted RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 HSD17B2P37059 387 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 STAT6P42226 847 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 EPS15P42566 896 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 MXI1P50539 228 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 ZNF75DP51815 510 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 CCNG1P51959 295 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 WNT3AP56704 352 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms