RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 NFE2L3Q9Y4A8 694 aa17.2■□□□□ 0.34
CLK3-223ENST00000568488 GOLGA8IPA6NC78 632 aa17.19■□□□□ 0.34
CLK3-223ENST00000568488 GOLGA8JA6NMD2 632 aa17.19■□□□□ 0.34
CLK3-223ENST00000568488 METTL12A8MUP2 240 aa17.19■□□□□ 0.34
CLK3-223ENST00000568488 RRP8O43159 456 aaKnown RBP17.19■□□□□ 0.34
CLK3-223ENST00000568488 EIF2S3P41091 472 aaKnown RBP17.19■□□□□ 0.34
CLK3-223ENST00000568488 CSNK1EP49674 416 aaKnown RBP17.19■□□□□ 0.34
CLK3-223ENST00000568488 CACNA2D1P54289 1103 aa17.19■□□□□ 0.34
CLK3-223ENST00000568488 HECTD3Q5T447 861 aa17.19■□□□□ 0.34
CLK3-223ENST00000568488 TPGS1Q6ZTW0 290 aa17.19■□□□□ 0.34
CLK3-223ENST00000568488 HPDLQ96IR7 371 aa17.19■□□□□ 0.34
CLK3-223ENST00000568488 BBS2Q9BXC9 721 aa17.19■□□□□ 0.34
CLK3-223ENST00000568488 NACA2Q9H009 215 aa17.19■□□□□ 0.34
CLK3-223ENST00000568488 ITM2CQ9NQX7 267 aa17.19■□□□□ 0.34
CLK3-223ENST00000568488 AK5Q9Y6K8 562 aa17.19■□□□□ 0.34
CLK3-223ENST00000568488 KCNJ18B7U540 433 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 E9PAM4 449 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 KCNK3O14649 394 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 TYRP14679 529 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 JUPP14923 745 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 UBA7P41226 1012 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 HMGN5P82970 282 aaKnown RBP17.18■□□□□ 0.34
CLK3-223ENST00000568488 CFHR1Q03591 330 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 STARD3Q14849 445 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 FUT11Q495W5 492 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 ZNF720Q7Z2F6 126 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 NUP93Q8N1F7 819 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 PDZD8Q8NEN9 1154 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 ENGASEQ8NFI3 743 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 RASSF8Q8NHQ8 419 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 SNX19Q92543 992 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 NXPE2Q96DL1 559 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 SNX25Q9H3E2 840 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 ST6GALNAC4Q9H4F1 302 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 CCSER2Q9H7U1 834 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 PDE11AQ9HCR9 933 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 ZNF462Q96JM2 2506 aa17.18■□□□□ 0.34
CLK3-223ENST00000568488 GFRA2O00451 464 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 TLX3O43711 291 aaPredicted RBP17.17■□□□□ 0.34
CLK3-223ENST00000568488 LDHAP00338 332 aaKnown RBP17.17■□□□□ 0.34
CLK3-223ENST00000568488 WARSP23381 471 aaKnown RBP17.17■□□□□ 0.34
CLK3-223ENST00000568488 OXTRP30559 389 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 GNL1P36915 607 aaPredicted RBP17.17■□□□□ 0.34
CLK3-223ENST00000568488 GRK6P43250 576 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 KCNA1Q09470 495 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 KIF19Q2TAC6 998 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 MCTP1Q6DN14 999 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 METTL3Q86U44 580 aaKnown RBP17.17■□□□□ 0.34
CLK3-223ENST00000568488 TMPRSS12Q86WS5 348 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 ANKRD36BP1Q96IX9 119 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 TRIM9Q9C026 710 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 BLOC1S4Q9NUP1 217 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 GMIPQ9P107 970 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 WDR35Q9P2L0 1181 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 LIMCH1Q9UPQ0 1083 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 EXOC7Q9UPT5 735 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 SNX11Q9Y5W9 270 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 STON1Q9Y6Q2 735 aa17.17■□□□□ 0.34
CLK3-223ENST00000568488 NAV2Q8IVL1 2488 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 CLDN5O00501 218 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 RTN3O95197 1032 aaPredicted RBP17.16■□□□□ 0.34
CLK3-223ENST00000568488 DGKGP49619 791 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 TPMTP51580 245 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 SF3A1Q15459 793 aaKnown RBP17.16■□□□□ 0.34
CLK3-223ENST00000568488 PTPRNQ16849 979 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 C6orf118Q5T5N4 469 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 GPR155Q7Z3F1 870 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 SFR1Q86XK3 245 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 KRI1Q8N9T8 703 aaKnown RBP17.16■□□□□ 0.34
CLK3-223ENST00000568488 OR6B3Q8NGW1 331 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 RAD54LQ92698 747 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 BHMTQ93088 406 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 HVCN1Q96D96 273 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 SIPA1Q96FS4 1042 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 MRPL45Q9BRJ2 306 aaKnown RBP17.16■□□□□ 0.34
CLK3-223ENST00000568488 NUP58Q9BVL2 599 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 ZNF518BQ9C0D4 1074 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 MKRN2Q9H000 416 aaKnown RBP17.16■□□□□ 0.34
CLK3-223ENST00000568488 PCIF1Q9H4Z3 704 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 TMEM30AQ9NV96 361 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 TBC1D7Q9P0N9 293 aa17.16■□□□□ 0.34
CLK3-223ENST00000568488 USP36Q9P275 1121 aaKnown RBP17.16■□□□□ 0.34
CLK3-223ENST00000568488 CFAP46Q8IYW2 2715 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 CACNG3O60359 315 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 SYNCRIPO60506 623 aaKnown RBP17.15■□□□□ 0.34
CLK3-223ENST00000568488 TNNC2P02585 160 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 ACADMP11310 421 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 PTPN1P18031 435 aaKnown RBP17.15■□□□□ 0.34
CLK3-223ENST00000568488 DDIT3P35638 169 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 AFF3P51826 1226 aaKnown RBP17.15■□□□□ 0.34
CLK3-223ENST00000568488 CLDN6P56747 220 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 RILPL1Q5EBL4 403 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 DYMQ7RTS9 669 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 LIMS2Q7Z4I7 341 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 FAM124AQ86V42 546 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 CACUL1Q86Y37 369 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 TMPRSS6Q8IU80 811 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 SYCP3Q8IZU3 236 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 OVCA2Q8WZ82 227 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 PRCCQ92733 491 aaPredicted RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms