RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 TMEM176AQ96HP8 235 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 ZFRQ96KR1 1074 aaKnown RBP5.05□□□□□ -1.6
CLK3-219ENST00000567805 HEXIM2Q96MH2 286 aaKnown RBP5.05□□□□□ -1.6
CLK3-219ENST00000567805 CEP63Q96MT8 703 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 CDK5RAP1Q96SZ6 601 aaKnown RBP5.05□□□□□ -1.6
CLK3-219ENST00000567805 DUSP16Q9BY84 665 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 NACA2Q9H009 215 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 CCSER2Q9H7U1 834 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 FBRSL1Q9HCM7 1045 aaKnown RBP5.05□□□□□ -1.6
CLK3-219ENST00000567805 CYLDQ9NQC7 956 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 CISHQ9NSE2 258 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 C2orf42Q9NWW7 574 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 GMIPQ9P107 970 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 CFAP97Q9P2B7 532 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 ARMCX3Q9UH62 379 aaPredicted RBP5.05□□□□□ -1.6
CLK3-219ENST00000567805 GMEB2Q9UKD1 530 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 MAN1B1Q9UKM7 699 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 SLC8A2Q9UPR5 921 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 SH3BP1Q9Y3L3 701 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 NUP205Q92621 2012 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 OTOGLQ3ZCN5 2332 aa5.05□□□□□ -1.6
CLK3-219ENST00000567805 TNRC6BQ9UPQ9 1833 aaKnown RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 RIF1Q5UIP0 2472 aaKnown RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 THADAQ6YHU6 1953 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 A0A0A0MRY4 1105 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 PPP1R3GB7ZBB8 358 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 K7EQS6 105 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 GPR37O15354 613 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 P4HA2O15460 535 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 HOXC11O43248 304 aaPredicted RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 GADD45BO75293 160 aaPredicted RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 APBB3O95704 486 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 GNA14O95837 355 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 APODP05090 189 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 ADH5P11766 374 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 RARGP13631 454 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 ACO1P21399 889 aaKnown RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 SDHBP21912 280 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 BMP6P22004 513 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 ATP5C1P36542 298 aaKnown RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 ID4P47928 161 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 FMO5P49326 533 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 PGFP49763 221 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 UBE2HP62256 183 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 MRPS21P82921 87 aaKnown RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 GAD2Q05329 585 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 CETN1Q12798 172 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 PAK1Q13153 545 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 CUL2Q13617 745 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 MORC3Q14149 939 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 SIM2Q14190 667 aaPredicted RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 CCDC40Q4G0X9 1142 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 HSF5Q4G112 596 aaPredicted RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 ARHGAP17Q68EM7 881 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 NAIF1Q69YI7 327 aaPredicted RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 HEATR6Q6AI08 1181 aaKnown RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 ISM2Q6H9L7 571 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 KLHL10Q6JEL2 608 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 TTI2Q6NXR4 508 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 RHBDF2Q6PJF5 856 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 PRR23BQ6ZRT6 265 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 BBS7Q8IWZ6 715 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 ARHGAP18Q8N392 663 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 DCLK2Q8N568 766 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 TRIML1Q8N9V2 468 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 ANKRD52Q8NB46 1076 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 USP33Q8TEY7 942 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 GAB3Q8WWW8 586 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 NELFBQ8WX92 580 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 EZH1Q92800 747 aaPredicted RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 TATDN2Q93075 761 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 JAKMIP2Q96AA8 810 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 PNKPQ96T60 521 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 ARID3AQ99856 593 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 KLF16Q9BXK1 252 aaPredicted RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 UBXN6Q9BZV1 441 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 SPHK2Q9NRA0 654 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.04□□□□□ -1.6
CLK3-219ENST00000567805 OSER1Q9NX31 292 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 CLIC5Q9NZA1 410 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 EBF1Q9UH73 591 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 DNMT3LQ9UJW3 386 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 NAGPAQ9UK23 515 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 KIAA1257Q9ULG3 409 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 CTNND2Q9UQB3 1225 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 USP3Q9Y6I4 520 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 MYO18AQ92614 2054 aaKnown RBP5.04□□□□□ -1.6
CLK3-219ENST00000567805 SPTBN4Q9H254 2564 aa5.04□□□□□ -1.6
CLK3-219ENST00000567805 PTPRZ1P23471 2315 aaPredicted RBP5.03□□□□□ -1.6
CLK3-219ENST00000567805 GVINP1Q7Z2Y8 2422 aa5.03□□□□□ -1.6
CLK3-219ENST00000567805 A0A1W2PQH9 124 aa5.03□□□□□ -1.6
CLK3-219ENST00000567805 PRR5-ARHGAP8B1AHC4 643 aa5.03□□□□□ -1.6
CLK3-219ENST00000567805 BHMG1C9JSJ3 638 aaPredicted RBP5.03□□□□□ -1.6
CLK3-219ENST00000567805 BIN1O00499 593 aa5.03□□□□□ -1.6
CLK3-219ENST00000567805 SCAMP3O14828 347 aaKnown RBP5.03□□□□□ -1.6
CLK3-219ENST00000567805 XPO1O14980 1071 aaKnown RBP5.03□□□□□ -1.6
CLK3-219ENST00000567805 AXIN1O15169 862 aa5.03□□□□□ -1.6
CLK3-219ENST00000567805 FOXD2O60548 495 aaPredicted RBP5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms