RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 SLC25A52Q3SY17 297 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 DCAF6Q58WW2 860 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 ODF2Q5BJF6 829 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 MEI1Q5TIA1 1274 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 BSPRYQ5W0U4 402 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 LILRA6Q6PI73 481 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 SND1Q7KZF4 910 aaKnown RBP eCLIP13.4□□□□□ -0.26
CLK3-214ENST00000564096 STRADAQ7RTN6 431 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 NT5DC3Q86UY8 548 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 RHOT1Q8IXI2 618 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 DEFB106AQ8N104 65 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 STKLD1Q8NE28 680 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 GPR152Q8TDT2 470 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 FAM172AQ8WUF8 416 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 PSMG2Q969U7 264 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 MYRFLQ96LU7 910 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 ZNF512Q96ME7 567 aaPredicted RBP13.4□□□□□ -0.26
CLK3-214ENST00000564096 CFAP57Q96MR6 1250 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 DDX23Q9BUQ8 820 aaKnown RBP13.4□□□□□ -0.26
CLK3-214ENST00000564096 TRIM7Q9C029 511 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 ZNF576Q9H609 170 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 TLE6Q9H808 572 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 DZANK1Q9NVP4 752 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 ZDHHC7Q9NXF8 308 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 CLIC5Q9NZA1 410 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 USTQ9Y2C2 406 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 HYOU1Q9Y4L1 999 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 ALG6Q9Y672 507 aa13.4□□□□□ -0.26
CLK3-214ENST00000564096 A0A1W2PQH9 124 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 PRPSAP2O60256 369 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 ZMYND10O75800 440 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 KRT7P08729 469 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 POU2F2P09086 479 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 TCP1P17987 556 aaKnown RBP13.39□□□□□ -0.27
CLK3-214ENST00000564096 CTNNA2P26232 953 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 GBP1P32455 592 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 CTNNA1P35221 906 aaKnown RBP13.39□□□□□ -0.27
CLK3-214ENST00000564096 USP46P62068 366 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 ATP11AP98196 1134 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 OGDHQ02218 1023 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 ZNF252P-AS1Q0IIN9 211 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 TAF5Q15542 800 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 DUSP6Q16828 381 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 CDO1Q16878 200 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 LRRC38Q5VT99 294 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 BHLHA9Q7RTU4 235 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 POLNQ7Z5Q5 900 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 LEMD2Q8NC56 503 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 CASP10Q92851 521 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 SERPINB11Q96P15 392 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 NACA2Q9H009 215 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 SMOC2Q9H3U7 446 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 GOLPH3Q9H4A6 298 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 NSUN3Q9H649 340 aaKnown RBP13.39□□□□□ -0.27
CLK3-214ENST00000564096 ASAH2Q9NR71 780 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 TRPM5Q9NZQ8 1165 aa13.39□□□□□ -0.27
CLK3-214ENST00000564096 CEP290O15078 2479 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 EPOPA6NHQ4 379 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 ENC1O14682 589 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 LRCH4O75427 683 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 F9P00740 461 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 ATP1A1P05023 1023 aaKnown RBP13.38□□□□□ -0.27
CLK3-214ENST00000564096 SPATA31D3P0C874 917 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 CDC25CP30307 473 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 GJC1P36383 396 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 NRIP1P48552 1158 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 TUBP50607 506 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 DNA2P51530 1060 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 MTMR3Q13615 1198 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 TUBB2AQ13885 445 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 CCDC14Q49A88 953 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 PABPC1LQ4VXU2 614 aaKnown RBP13.38□□□□□ -0.27
CLK3-214ENST00000564096 ZFYVE27Q5T4F4 411 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 SPATA31D4Q6ZUB0 917 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 HFE2Q6ZVN8 426 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 NDRG1Q92597 394 aaKnown RBP13.38□□□□□ -0.27
CLK3-214ENST00000564096 EDEM1Q92611 657 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 HES6Q96HZ4 224 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 TBCBQ99426 244 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 TUBB2BQ9BVA1 445 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 SFXN1Q9H9B4 322 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 DDX56Q9NY93 547 aaKnown RBP13.38□□□□□ -0.27
CLK3-214ENST00000564096 SNX12Q9UMY4 172 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 NAALADL1Q9UQQ1 740 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 HCFC2Q9Y5Z7 792 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 PLXNA3P51805 1871 aa13.38□□□□□ -0.27
CLK3-214ENST00000564096 M0QYT0 321 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 ZDHHC11BP0C7U3 371 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 RARGP13631 454 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 EPCAMP16422 314 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 HMGA1P17096 107 aaKnown RBP13.37□□□□□ -0.27
CLK3-214ENST00000564096 CETN2P41208 172 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 AIF1P55008 147 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 RWDD2BP57060 319 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 DEUP1Q05D60 604 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 NNTQ13423 1086 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 CLUL1Q15846 466 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 C15orf59Q2T9L4 293 aaPredicted RBP13.37□□□□□ -0.27
CLK3-214ENST00000564096 ARL13BQ3SXY8 428 aa13.37□□□□□ -0.27
CLK3-214ENST00000564096 SEL1L2Q5TEA6 688 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms