RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 SYPP08247 313 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 KRT19P08727 400 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 PLA2G2AP14555 144 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 ITPKBP27987 946 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 MYO1EQ12965 1108 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 FUT11Q495W5 492 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 FAM184AQ8NB25 1140 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 OTUB2Q96DC9 234 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 HPDLQ96IR7 371 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 EPSTI1Q96J88 318 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 KCNK16Q96T55 309 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 XYLT2Q9H1B5 865 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 PCIF1Q9H4Z3 704 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 GMIPQ9P107 970 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 TBC1D14Q9P2M4 693 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 DEC1Q9P2X7 70 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 FBXO10Q9UK96 956 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 APOBEC2Q9Y235 224 aaKnown RBP11.01□□□□□ -0.65
SF3B3-204ENST00000563739 COL27A1Q8IZC6 1860 aaPredicted RBP11□□□□□ -0.65
SF3B3-204ENST00000563739 A0A1B0GTW7 788 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 ZNF217O75362 1048 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 TACC1O75410 805 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 CD2BP2O95400 341 aaKnown RBP11□□□□□ -0.65
SF3B3-204ENST00000563739 IGLV3-19P01714 112 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 C7P10643 843 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 IRF1P10914 325 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 PPP3CCP48454 512 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 COPAP53621 1224 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 SLC5A3P53794 718 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 IFRD2Q12894 506 aaPredicted RBP11□□□□□ -0.65
SF3B3-204ENST00000563739 POSTNQ15063 836 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 SMAD1Q15797 465 aaKnown RBP11□□□□□ -0.65
SF3B3-204ENST00000563739 KCNT1Q5JUK3 1230 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 GRAMD4Q6IC98 578 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 Q6ZNB5 142 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 GPRIN1Q7Z2K8 1008 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 TRMT11Q7Z4G4 463 aaKnown RBP11□□□□□ -0.65
SF3B3-204ENST00000563739 METTL3Q86U44 580 aaKnown RBP11□□□□□ -0.65
SF3B3-204ENST00000563739 FAM35AQ86V20 835 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 DDX42Q86XP3 938 aaKnown RBP eCLIP11□□□□□ -0.65
SF3B3-204ENST00000563739 PLEKHO2Q8TD55 490 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 ELMO3Q96BJ8 720 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 TOE1Q96GM8 510 aaKnown RBP11□□□□□ -0.65
SF3B3-204ENST00000563739 ORAI3Q9BRQ5 295 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 KLF16Q9BXK1 252 aaPredicted RBP11□□□□□ -0.65
SF3B3-204ENST00000563739 SDCBP2Q9H190 292 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 PRORYQ9H606 182 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 GAREM1Q9H706 876 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 OLFML3Q9NRN5 406 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 TM7SF3Q9NS93 570 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 DNAJC17Q9NVM6 304 aaKnown RBP11□□□□□ -0.65
SF3B3-204ENST00000563739 NFE2L3Q9Y4A8 694 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 RAI2Q9Y5P3 530 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 KNTC1P50748 2209 aa11□□□□□ -0.65
SF3B3-204ENST00000563739 ARID1BQ8NFD5 2236 aaPredicted RBP11□□□□□ -0.65
SF3B3-204ENST00000563739 COL6A6A6NMZ7 2263 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 A0A1B0GVT2 93 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 BEST1O76090 585 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 PRPF6O94906 941 aaKnown RBP10.99□□□□□ -0.65
SF3B3-204ENST00000563739 TBX18O95935 607 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 ABL1P00519 1130 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 TMEM191BP0C7N4 346 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 NCAM1P13591 858 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 TYRP14679 529 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 PTPN1P18031 435 aaKnown RBP10.99□□□□□ -0.65
SF3B3-204ENST00000563739 CD6P30203 668 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 ABCD1P33897 745 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 UBA7P41226 1012 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 IL12RB1P42701 662 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 TUBP50607 506 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 HLA-BQ31612 363 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 DCAF12L1Q5VU92 463 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 LAYNQ6UX15 382 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 KIAA1324Q6UXG2 1013 aaKnown RBP10.99□□□□□ -0.65
SF3B3-204ENST00000563739 HTR3DQ70Z44 454 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 CHPFQ8IZ52 775 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 RGL4Q8IZJ4 473 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 OVCA2Q8WZ82 227 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 ZNF516Q92618 1163 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 FBXO32Q969P5 355 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 CALML4Q96GE6 196 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 ACCSQ96QU6 501 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 UBL7Q96S82 380 aaPredicted RBP10.99□□□□□ -0.65
SF3B3-204ENST00000563739 SMOQ99835 787 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 GPR174Q9BXC1 333 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 ZDHHC5Q9C0B5 715 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 ELOVL4Q9GZR5 314 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 FAM124BQ9H5Z6 455 aaPredicted RBP10.99□□□□□ -0.65
SF3B3-204ENST00000563739 SUSD2Q9UGT4 822 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 CHORDC1Q9UHD1 332 aaPredicted RBP10.99□□□□□ -0.65
SF3B3-204ENST00000563739 CLEC4EQ9ULY5 219 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 PCDHGB2Q9Y5G2 931 aa10.99□□□□□ -0.65
SF3B3-204ENST00000563739 PTPN13Q12923 2485 aa10.98□□□□□ -0.65
SF3B3-204ENST00000563739 METTL12A8MUP2 240 aa10.98□□□□□ -0.65
SF3B3-204ENST00000563739 C10orf142B7Z368 130 aa10.98□□□□□ -0.65
SF3B3-204ENST00000563739 NEDD8-MDP1E9PL57 170 aa10.98□□□□□ -0.65
SF3B3-204ENST00000563739 MDM4O15151 490 aa10.98□□□□□ -0.65
SF3B3-204ENST00000563739 ATXN7O15265 892 aaPredicted RBP10.98□□□□□ -0.65
SF3B3-204ENST00000563739 KRT18P05783 430 aaKnown RBP10.98□□□□□ -0.65
SF3B3-204ENST00000563739 ACO1P21399 889 aaKnown RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms