RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 GAB4Q2WGN9 574 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 C2orf27AQ580R0 203 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 C10orf120Q5SQS8 335 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 KLHDC10Q6PID8 442 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 NUDT18Q6ZVK8 323 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 HTR3DQ70Z44 454 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 ARHGAP18Q8N392 663 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 ZNF276Q8N554 614 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 TRIML1Q8N9V2 468 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 USP33Q8TEY7 942 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 NMUR1Q9HB89 426 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 ARHGEF4Q9NR80 690 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 SPHK2Q9NRA0 654 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 CLIC5Q9NZA1 410 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 USP18Q9UMW8 372 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 USP3Q9Y6I4 520 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 MYOFQ9NZM1 2061 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 K7EQS6 105 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 AXIN1O15169 862 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 RPP40O75818 363 aaKnown RBP17.72■□□□□ 0.43
CLK3-210ENST00000563112 KAT7O95251 611 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 APBB3O95704 486 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 CCDC192P0DO97 292 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 VDRP11473 427 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 GRIA2P42262 883 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 STX17P56962 302 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 MRPS21P82921 87 aaKnown RBP17.72■□□□□ 0.43
CLK3-210ENST00000563112 GOLGA7BQ2TAP0 167 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 ANO4Q32M45 955 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 PIGZQ86VD9 579 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 GAB3Q8WWW8 586 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 HHIPQ96QV1 700 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 OSER1Q9NX31 292 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 NUDT5Q9UKK9 219 aa17.72■□□□□ 0.43
CLK3-210ENST00000563112 HOXC11O43248 304 aaPredicted RBP17.71■□□□□ 0.43
CLK3-210ENST00000563112 HOXC13P31276 330 aa17.71■□□□□ 0.43
CLK3-210ENST00000563112 BCAT1P54687 386 aa17.71■□□□□ 0.43
CLK3-210ENST00000563112 CACNA2D4Q7Z3S7 1137 aa17.71■□□□□ 0.43
CLK3-210ENST00000563112 SCD5Q86SK9 330 aa17.71■□□□□ 0.43
CLK3-210ENST00000563112 PPM1KQ8N3J5 372 aa17.71■□□□□ 0.43
CLK3-210ENST00000563112 TSTD1Q8NFU3 115 aa17.71■□□□□ 0.43
CLK3-210ENST00000563112 WBP2Q969T9 261 aa17.71■□□□□ 0.43
CLK3-210ENST00000563112 SRRTQ9BXP5 876 aaKnown RBP17.71■□□□□ 0.43
CLK3-210ENST00000563112 LRRC4Q9HBW1 653 aa17.71■□□□□ 0.43
CLK3-210ENST00000563112 POLR3BQ9NW08 1133 aaPredicted RBP17.71■□□□□ 0.43
CLK3-210ENST00000563112 KIAA1468Q9P260 1216 aa17.71■□□□□ 0.43
CLK3-210ENST00000563112 DEC1Q9P2X7 70 aa17.71■□□□□ 0.43
CLK3-210ENST00000563112 TSPAN16Q9UKR8 245 aa17.71■□□□□ 0.43
CLK3-210ENST00000563112 A0A0A0MRY4 1105 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 XPO1O14980 1071 aaKnown RBP17.7■□□□□ 0.42
CLK3-210ENST00000563112 LRP3O75074 770 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 SDHBP21912 280 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 TNFRSF4P43489 277 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 TKTL1P51854 596 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 COG7P83436 770 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 LMNB2Q03252 620 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 KDSRQ06136 332 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 SPEM2Q0P670 501 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 BST2Q10589 180 aaKnown RBP17.7■□□□□ 0.42
CLK3-210ENST00000563112 CAMK4Q16566 473 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 HSF5Q4G112 596 aaPredicted RBP17.7■□□□□ 0.42
CLK3-210ENST00000563112 RAB41Q5JT25 222 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 TMEM270Q6UE05 265 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 RSRC2Q7L4I2 434 aaKnown RBP17.7■□□□□ 0.42
CLK3-210ENST00000563112 C12orf40Q86WS4 652 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 TTC30AQ86WT1 665 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 TMEM25Q86YD3 366 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 MIB1Q86YT6 1006 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 CCDC33Q8N5R6 958 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 NAT16Q8N8M0 369 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 XPO6Q96QU8 1125 aaKnown RBP17.7■□□□□ 0.42
CLK3-210ENST00000563112 WDR35Q9P2L0 1181 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 EBF1Q9UH73 591 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 MMP17Q9ULZ9 603 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 ZNF510Q9Y2H8 683 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 PCDHB4Q9Y5E5 795 aa17.7■□□□□ 0.42
CLK3-210ENST00000563112 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.7■□□□□ 0.42
CLK3-210ENST00000563112 TBC1D3BA6NDS4 549 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 PRR5-ARHGAP8B1AHC4 643 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 MDM4O15151 490 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 TULP3O75386 442 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 ZBED1O96006 694 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 AFPP02771 609 aaKnown RBP17.69■□□□□ 0.42
CLK3-210ENST00000563112 PAEPP09466 180 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 DGKEP52429 567 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 MARSP56192 900 aaKnown RBP17.69■□□□□ 0.42
CLK3-210ENST00000563112 YWHAGP61981 247 aaKnown RBP eCLIP17.69■□□□□ 0.42
CLK3-210ENST00000563112 ARHGAP8P85298 464 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 PDE4CQ08493 712 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 EFEMP1Q12805 493 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 KCNH2Q12809 1159 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 TRIM59Q8IWR1 403 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 FAM160A2Q8N612 972 aaPredicted RBP17.69■□□□□ 0.42
CLK3-210ENST00000563112 UBR7Q8N806 425 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 EHBP1Q8NDI1 1231 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 DCLK3Q9C098 648 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 RASAL2Q9UJF2 1139 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 STRIP2Q9ULQ0 834 aa17.69■□□□□ 0.42
CLK3-210ENST00000563112 SPAG17Q6Q759 2223 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 SDK1Q7Z5N4 2213 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms