RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 BYSLQ13895 437 aaKnown RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 POLD3Q15054 466 aaPredicted RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 PDK1Q15118 436 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 TMED2Q15363 201 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 IZUMO3Q5VZ72 239 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 CHRDL2Q6WN34 429 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 UNC45BQ8IWX7 931 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 ZBED8Q8IZ13 594 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 SPATA20Q8TB22 786 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 COG1Q8WTW3 980 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 POF1BQ8WVV4 589 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 SNX12Q9UMY4 172 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 ANGPTL3Q9Y5C1 460 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 ANO9A1A5B4 782 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 WDR91A4D1P6 747 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 AGRPO00253 132 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 TTI1O43156 1089 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 LSM8O95777 96 aaKnown RBP9.59□□□□□ -0.87
VPS39-205ENST00000562258 ATP5DP30049 168 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 MIPP30301 263 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 WASP42768 502 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 OXCT1P55809 520 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 MTMR3Q13615 1198 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 CFAP52Q8N1V2 620 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 FAM136AQ96C01 138 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 SERPINB11Q96P15 392 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 PAAF1Q9BRP4 392 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 CINPQ9BW66 212 aaPredicted RBP9.59□□□□□ -0.87
VPS39-205ENST00000562258 TM6SF2Q9BZW4 377 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 NDFIP2Q9NV92 336 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 AIPL1Q9NZN9 384 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 TRAV19A0A0A6YYK7 116 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 LRRC10BA6NIK2 292 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 NRIP1P48552 1158 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 ARL4CP56559 192 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 MFN1Q8IWA4 741 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 FAM76AQ8TAV0 307 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 BLOC1S5Q8TDH9 187 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 DEPDC1BQ8WUY9 529 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 C9orf72Q96LT7 481 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 NT5MQ9NPB1 228 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 PIH1D1Q9NWS0 290 aaKnown RBP9.59□□□□□ -0.87
VPS39-205ENST00000562258 SAE1Q9UBE0 346 aaPredicted RBP9.59□□□□□ -0.87
VPS39-205ENST00000562258 COL2A1P02458 1487 aaPredicted RBP9.59□□□□□ -0.87
VPS39-205ENST00000562258 RAMP2O60895 175 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 FGF18O76093 207 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 CA3P07451 260 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 CA4P22748 312 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 RHOAP61586 193 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 POU5F1BQ06416 359 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 NSUN2Q08J23 767 aaKnown RBP eCLIP9.59□□□□□ -0.87
VPS39-205ENST00000562258 ZNF268Q14587 947 aaPredicted RBP9.59□□□□□ -0.87
VPS39-205ENST00000562258 FAM183BPQ6ZVS7 135 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 TMEM130Q8N3G9 435 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 C12orf76Q8N812 135 aaPredicted RBP9.59□□□□□ -0.87
VPS39-205ENST00000562258 ATL2Q8NHH9 583 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 SCAMP5Q8TAC9 235 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 RAB3IL1Q8TBN0 382 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 VPS39Q96JC1 886 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 ST6GALNAC4Q9H4F1 302 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 C10orf88Q9H8K7 445 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 DOLKQ9UPQ8 538 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 SMCHD1A6NHR9 2005 aa9.59□□□□□ -0.87
VPS39-205ENST00000562258 ARHGAP42A6NI28 874 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 RNF225M0QZC1 329 aaPredicted RBP9.58□□□□□ -0.88
VPS39-205ENST00000562258 PCDH8O95206 1070 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 CAPN2P17655 700 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 STX2P32856 288 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 AMPD2Q01433 879 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 C1QBPQ07021 282 aaKnown RBP9.58□□□□□ -0.88
VPS39-205ENST00000562258 DDX42Q86XP3 938 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS39-205ENST00000562258 FAM71AQ8IYT1 594 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 KRT222Q8N1A0 295 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 TOP6BLQ8N6T0 577 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 KLHL23Q8NBE8 558 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 BBS2Q9BXC9 721 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 NRDE2Q9H7Z3 1164 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 APOBEC3GQ9HC16 384 aaKnown RBP9.58□□□□□ -0.88
VPS39-205ENST00000562258 ABCC13Q9NSE7 274 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 SLC25A13Q9UJS0 675 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 NAALADL1Q9UQQ1 740 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 LZTS3O60299 673 aaPredicted RBP9.58□□□□□ -0.88
VPS39-205ENST00000562258 PROSCO94903 275 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 AGMOQ6ZNB7 445 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 ARL14EPQ8N8R7 260 aaPredicted RBP9.58□□□□□ -0.88
VPS39-205ENST00000562258 MYRIPQ8NFW9 859 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 ACTL9Q8TC94 416 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 MORC4Q8TE76 937 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 RUNDC3BQ96NL0 473 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 PARD6BQ9BYG5 372 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 RBM22Q9NW64 420 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS39-205ENST00000562258 GMIPQ9P107 970 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 OR12D3Q9UGF7 316 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 STXBP5LQ9Y2K9 1186 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 GOLGA6L7A0A1B0GV03 622 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 A0A1W2PRU2 124 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 E5RI56 91 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 DNAJC6O75061 913 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 GARSP41250 739 aaKnown RBP9.58□□□□□ -0.88
VPS39-205ENST00000562258 SLC12A1Q13621 1099 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms