RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 PDGFCQ9NRA1 345 aa6.72□□□□□ -1.33
LRRC28-220ENST00000561253 ADD3Q9UEY8 706 aaKnown RBP6.72□□□□□ -1.33
LRRC28-220ENST00000561253 INTUQ9ULD6 942 aa6.72□□□□□ -1.33
LRRC28-220ENST00000561253 PCDHA6Q9UN73 950 aa6.72□□□□□ -1.33
LRRC28-220ENST00000561253 NR2E1Q9Y466 385 aa6.72□□□□□ -1.33
LRRC28-220ENST00000561253 PLXNA1Q9UIW2 1896 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.71□□□□□ -1.34
LRRC28-220ENST00000561253 GOLGA6CA6NDK9 693 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 GOLGA6BA6NDN3 693 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 ASB14A6NK59 587 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 BTBD18B2RXH4 712 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 KIF28PB7ZC32 967 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 ARHGAP6O43182 974 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 SEPT4O43236 478 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 PHF2O75151 1096 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 ALDH1A2O94788 518 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 FOSP01100 380 aaPredicted RBP6.71□□□□□ -1.34
LRRC28-220ENST00000561253 GOLGA6DP0CG33 693 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 AKAP5P24588 427 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 U2AF2P26368 475 aaKnown RBP eCLIP6.71□□□□□ -1.34
LRRC28-220ENST00000561253 GJB2P29033 226 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 GNA11P29992 359 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 ICAM3P32942 547 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 DDIT3P35638 169 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 KIR2DL3P43628 341 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 ATP2C1P98194 919 aaPredicted RBP6.71□□□□□ -1.34
LRRC28-220ENST00000561253 AKAP17AQ02040 695 aaKnown RBP6.71□□□□□ -1.34
LRRC28-220ENST00000561253 ACVR2BQ13705 512 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 SLC9C1Q4G0N8 1177 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 JAKMIP3Q5VZ66 844 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 XRRA1Q6P2D8 792 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 ABHD15Q6UXT9 468 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 UBE2Q1Q7Z7E8 422 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 FBXO16Q8IX29 292 aaPredicted RBP6.71□□□□□ -1.34
LRRC28-220ENST00000561253 BLIDQ8IZY5 108 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 CYP2W1Q8TAV3 490 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 CCDC12Q8WUD4 166 aaPredicted RBP6.71□□□□□ -1.34
LRRC28-220ENST00000561253 WASF1Q92558 559 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 ABHD8Q96I13 439 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 PGBD1Q96JS3 809 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 ABHD16BQ9H3Z7 469 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 C6orf50Q9HD87 102 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 GOLGA6AQ9NYA3 693 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 UBIAD1Q9Y5Z9 338 aa6.71□□□□□ -1.34
LRRC28-220ENST00000561253 CYP3A7-CYP3A51PA0A087WV96 503 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 FAM171A2A8MVW0 826 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 FAM86B1E9PN63 330 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 B4GALT3O60512 393 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 EIF3JO75822 258 aaKnown RBP6.7□□□□□ -1.34
LRRC28-220ENST00000561253 TOX4O94842 621 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 GJB1P08034 283 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 FAM86B2P0C5J1 330 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 CCL5P13501 91 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 CYP3A7P24462 503 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 ADSLP30566 484 aaPredicted RBP6.7□□□□□ -1.34
LRRC28-220ENST00000561253 NLRP5P59047 1200 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 BPIFB4P59827 614 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 UBXN2AP68543 259 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 SP2Q02086 613 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 GUCY1B3Q02153 619 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 PPP3CAQ08209 521 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 MGAT2Q10469 447 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 GTF2H3Q13889 308 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 STXBP2Q15833 593 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 TBR1Q16650 682 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 RNF151Q2KHN1 245 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 C19orf54Q5BKX5 351 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 ARHGEF16Q5VV41 709 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 MFSD14CQ5VZR4 134 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 CCSAPQ6IQ19 270 aaPredicted RBP6.7□□□□□ -1.34
LRRC28-220ENST00000561253 B3GNT9Q6UX72 402 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 DIS3L2Q8IYB7 885 aaKnown RBP6.7□□□□□ -1.34
LRRC28-220ENST00000561253 LGI4Q8N135 537 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 ANKRD53Q8N9V6 530 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 CLIP3Q96DZ5 547 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 C8orf76Q96K31 380 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 LRGUKQ96M69 825 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.7□□□□□ -1.34
LRRC28-220ENST00000561253 UPF3AQ9H1J1 476 aaKnown RBP6.7□□□□□ -1.34
LRRC28-220ENST00000561253 SLC6A15Q9H2J7 730 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 JADE2Q9NQC1 790 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 TLR9Q9NR96 1032 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 PUF60Q9UHX1 559 aaKnown RBP6.7□□□□□ -1.34
LRRC28-220ENST00000561253 OGDHLQ9ULD0 1010 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 MTMR6Q9Y217 621 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.7□□□□□ -1.34
LRRC28-220ENST00000561253 SLC4A7Q9Y6M7 1214 aa6.7□□□□□ -1.34
LRRC28-220ENST00000561253 MYADML2A6NDP7 307 aa6.69□□□□□ -1.34
LRRC28-220ENST00000561253 CCDC154A6NI56 674 aa6.69□□□□□ -1.34
LRRC28-220ENST00000561253 TRIM13O60858 407 aa6.69□□□□□ -1.34
LRRC28-220ENST00000561253 ATP9AO75110 1047 aa6.69□□□□□ -1.34
LRRC28-220ENST00000561253 OFD1O75665 1012 aa6.69□□□□□ -1.34
LRRC28-220ENST00000561253 STAM2O75886 525 aa6.69□□□□□ -1.34
LRRC28-220ENST00000561253 JUNP05412 331 aaKnown RBP6.69□□□□□ -1.34
LRRC28-220ENST00000561253 POU2F2P09086 479 aa6.69□□□□□ -1.34
LRRC28-220ENST00000561253 VSIG10L2P0DP72 767 aa6.69□□□□□ -1.34
LRRC28-220ENST00000561253 AKR1A1P14550 325 aa6.69□□□□□ -1.34
LRRC28-220ENST00000561253 KCNA2P16389 499 aa6.69□□□□□ -1.34
LRRC28-220ENST00000561253 SYT1P21579 422 aa6.69□□□□□ -1.34
LRRC28-220ENST00000561253 UBA1P22314 1058 aaKnown RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms