RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 C4orf50Q6ZRC1 276 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 NDRG1Q92597 394 aaKnown RBP13.46□□□□□ -0.26
SNX1-211ENST00000560829 TMEM209Q96SK2 561 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 MAK16Q9BXY0 300 aaKnown RBP13.46□□□□□ -0.26
SNX1-211ENST00000560829 TSPYL1Q9H0U9 437 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 NRDE2Q9H7Z3 1164 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 RRN3Q9NYV6 651 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 CALCOCO1Q9P1Z2 691 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 USP3Q9Y6I4 520 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 YJEFN3A6XGL0 299 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 E7ENQ6 273 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 H0YGN5 161 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 ZBED1O96006 694 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 BDNFP23560 247 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 L1CAMP32004 1257 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 ADCY8P40145 1251 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 SULT1E1P49888 294 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 ATXN1P54253 815 aaKnown RBP13.45□□□□□ -0.26
SNX1-211ENST00000560829 ATN1P54259 1190 aaPredicted RBP13.45□□□□□ -0.26
SNX1-211ENST00000560829 DYNLT1P63172 113 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 MMRN1Q13201 1228 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 SLMAPQ14BN4 828 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 NOMO1Q15155 1222 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 DCAF6Q58WW2 860 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 HFE2Q6ZVN8 426 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 BEND5Q7L4P6 421 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 GSTA5Q7RTV2 222 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 NPAS4Q8IUM7 802 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 RIN2Q8WYP3 895 aaPredicted RBP13.45□□□□□ -0.26
SNX1-211ENST00000560829 HAUS1Q96CS2 278 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 PGAP3Q96FM1 320 aaPredicted RBP13.45□□□□□ -0.26
SNX1-211ENST00000560829 ZNF333Q96JL9 665 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 PKNOX2Q96KN3 472 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 RUFY1Q96T51 708 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 SLC9A7Q96T83 725 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 MRPL9Q9BYD2 267 aaKnown RBP13.45□□□□□ -0.26
SNX1-211ENST00000560829 ZCWPW1Q9H0M4 648 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 PCDH9Q9HC56 1237 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 GPATCH2LQ9NWQ4 482 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 MTMR10Q9NXD2 777 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 LRFN2Q9ULH4 789 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 NFS1Q9Y697 457 aa13.45□□□□□ -0.26
SNX1-211ENST00000560829 RARGP13631 454 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 PECAM1P16284 738 aaPredicted RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 TGM2P21980 687 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 RDXP35241 583 aaKnown RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 TLE2Q04725 743 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 MRPL58Q14197 206 aaKnown RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 TRIP13Q15645 432 aaPredicted RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 ANKRD20A8PQ5CZ79 823 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 PQLC3Q8N755 202 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 SCLYQ96I15 445 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 FUBP3Q96I24 572 aaKnown RBP eCLIP13.44□□□□□ -0.26
SNX1-211ENST00000560829 TMEM175Q9BSA9 504 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 RHOBTB2Q9BYZ6 727 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 PABPC3Q9H361 631 aaKnown RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 PRDM16Q9HAZ2 1276 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 RCOR3Q9P2K3 495 aaPredicted RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 SAE1Q9UBE0 346 aaPredicted RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 ADAM28Q9UKQ2 775 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 FZD10Q9ULW2 581 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 AP4E1Q9UPM8 1137 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 PRG3Q9Y2Y8 225 aaPredicted RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 COL4A4P53420 1690 aaPredicted RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 GOLGA8KD6RF30 607 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 NDC80O14777 642 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 RNF40O75150 1001 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 TADA2AO75478 443 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 LTFP02788 710 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 ITGA8P53708 1063 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 PMS2P54278 862 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 AIF1P55008 147 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 FAM193AP78312 1265 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 TRIM60Q495X7 471 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 SYPL2Q5VXT5 272 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 HIBCHQ6NVY1 386 aaPredicted RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 SPATA2LQ8IUW3 424 aaPredicted RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 DCP1BQ8IZD4 617 aaKnown RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 CCDC185Q8N715 623 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 PLD5Q8N7P1 536 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 GLIS1Q8NBF1 620 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 PCDH19Q8TAB3 1148 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 TMEM121Q9BTD3 319 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 COLEC11Q9BWP8 271 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 FOXP3Q9BZS1 431 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 EPB41L4BQ9H329 900 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 TBX21Q9UL17 535 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 PLAAQ9Y263 795 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 ATP8A1Q9Y2Q0 1164 aa13.44□□□□□ -0.26
SNX1-211ENST00000560829 TDRD15B5MCY1 1934 aaKnown RBP13.44□□□□□ -0.26
SNX1-211ENST00000560829 DNALI1O14645 258 aaPredicted RBP13.43□□□□□ -0.26
SNX1-211ENST00000560829 APOL1O14791 398 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 MCF2LO15068 1137 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 ALDH2P05091 517 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 NUDT17P0C025 328 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 USP17L7P0C7H9 530 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 RABGGTBP53611 331 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 CCL23P55773 120 aa13.43□□□□□ -0.26
SNX1-211ENST00000560829 EIF3EP60228 445 aaKnown RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms