RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 VPS11Q9H270 941 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 NMRK1Q9NWW6 199 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 COL11A1P12107 1806 aaPredicted RBP11.77□□□□□ -0.53
CUX1-218ENST00000560541 SIGLEC16A6NMB1 481 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 GSC2O15499 205 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 MSCO60682 206 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 PENKP01210 267 aaPredicted RBP11.77□□□□□ -0.53
CUX1-218ENST00000560541 OXCT1P55809 520 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 ZNF200P98182 395 aaPredicted RBP11.77□□□□□ -0.53
CUX1-218ENST00000560541 TAP1Q03518 808 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 RASA2Q15283 850 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 ZNF280DQ6N043 979 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 POLNQ7Z5Q5 900 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 TMEM192Q8IY95 271 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.77□□□□□ -0.536e-7■■■■■ 139.2
CUX1-218ENST00000560541 CCDC33Q8N5R6 958 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 ENDOVQ8N8Q3 282 aaKnown RBP11.77□□□□□ -0.53
CUX1-218ENST00000560541 USP33Q8TEY7 942 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 ABHD8Q96I13 439 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 PCYT2Q99447 389 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 SLC13A1Q9BZW2 595 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 PPCSQ9HAB8 311 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.77□□□□□ -0.53
CUX1-218ENST00000560541 UTP6Q9NYH9 597 aaKnown RBP11.77□□□□□ -0.53
CUX1-218ENST00000560541 E7ESA3 106 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 B4GALT5O43286 388 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 TOM1L1O75674 476 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 DPEP1P16444 411 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 BMPR2Q13873 1038 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 PRKG1Q13976 671 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 CIAPIN1Q6FI81 312 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 TMEM53Q6P2H8 277 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 ZNF280CQ8ND82 737 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 FAF2Q96CS3 445 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 PTCD3Q96EY7 689 aaKnown RBP11.76□□□□□ -0.53
CUX1-218ENST00000560541 PEBP4Q96S96 227 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 TEX13BQ9BXU2 312 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 NMUR2Q9GZQ4 415 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 XYLT2Q9H1B5 865 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 DCLRE1BQ9H816 532 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 PCDH18Q9HCL0 1135 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 SSU72Q9NP77 194 aaKnown RBP11.76□□□□□ -0.53
CUX1-218ENST00000560541 SAR1AQ9NR31 198 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 RAB6BQ9NRW1 208 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 STRIP2Q9ULQ0 834 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 USP18Q9UMW8 372 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 IQANK1A0A1B0GTG1 560 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 TRIM49D1C9J1S8 452 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 H7C0C1 242 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 CAPN9O14815 690 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 UGT1A9O60656 530 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 CSDE1O75534 798 aaKnown RBP11.76□□□□□ -0.53
CUX1-218ENST00000560541 DLDP09622 509 aaKnown RBP11.76□□□□□ -0.53
CUX1-218ENST00000560541 ESRRAP11474 423 aaPredicted RBP11.76□□□□□ -0.53
CUX1-218ENST00000560541 UBA1P22314 1058 aaKnown RBP11.76□□□□□ -0.53
CUX1-218ENST00000560541 POLR2BP30876 1174 aaKnown RBP11.76□□□□□ -0.53
CUX1-218ENST00000560541 ATP5OP48047 213 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 CDH6P55285 790 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 STXBP2Q15833 593 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 C15orf59Q2T9L4 293 aaPredicted RBP11.76□□□□□ -0.53
CUX1-218ENST00000560541 XYLT1Q86Y38 959 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 TTC13Q8NBP0 860 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 FBXO27Q8NI29 283 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 UBA3Q8TBC4 463 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 APOPT1Q96IL0 206 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 NSL1Q96IY1 281 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 MRPL4Q9BYD3 311 aaKnown RBP11.76□□□□□ -0.53
CUX1-218ENST00000560541 ZNF518BQ9C0D4 1074 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 UGT1A7Q9HAW7 530 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 UGT1A10Q9HAW8 530 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 UGT1A8Q9HAW9 530 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 GPATCH2LQ9NWQ4 482 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 TAS2R1Q9NYW7 299 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 HEY1Q9Y5J3 304 aa11.76□□□□□ -0.53
CUX1-218ENST00000560541 CXorf49A8MYA2 514 aaPredicted RBP11.75□□□□□ -0.53
CUX1-218ENST00000560541 APOC4-APOC2K7ER74 178 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 CYB561D2O14569 222 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 ATG7O95352 703 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 APOC2P02655 101 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 HOXC6P09630 235 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 ZFXP17010 805 aaPredicted RBP11.75□□□□□ -0.53
CUX1-218ENST00000560541 YY1P25490 414 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 ETV4P43268 484 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 GALK1P51570 392 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 YWHAEP62258 255 aaKnown RBP11.75□□□□□ -0.53
CUX1-218ENST00000560541 CDK16Q00536 496 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 ROR1Q01973 937 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 PRKD1Q15139 912 aaPredicted RBP11.75□□□□□ -0.53
CUX1-218ENST00000560541 SMAD1Q15797 465 aaKnown RBP11.75□□□□□ -0.53
CUX1-218ENST00000560541 FAM102AQ5T9C2 384 aaPredicted RBP11.75□□□□□ -0.53
CUX1-218ENST00000560541 SNX30Q5VWJ9 437 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 SCUBE1Q8IWY4 988 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 FBXO41Q8TF61 875 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 NRG4Q8WWG1 115 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 PIWIL1Q96J94 861 aaKnown RBP11.75□□□□□ -0.53
CUX1-218ENST00000560541 NLRP4Q96MN2 994 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 TRAPPC9Q96Q05 1148 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 PPP1R16BQ96T49 567 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 SMYD3Q9H7B4 428 aa11.75□□□□□ -0.53
CUX1-218ENST00000560541 PCDHGC3Q9UN70 934 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms