RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 DPH6Q7L8W6 267 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 TMTC1Q8IUR5 882 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 GPD1LQ8N335 351 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 SH3RF2Q8TEC5 729 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 SPATA17Q96L03 361 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 SYT15Q9BQS2 421 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 SPTLC3Q9NUV7 552 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 ZNHIT6Q9NWK9 470 aaKnown RBP14.84□□□□□ -0.03
LDLR-213ENST00000560502 MYO6Q9UM54 1294 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 TNRC6BQ9UPQ9 1833 aaKnown RBP14.84□□□□□ -0.03
LDLR-213ENST00000560502 MYOFQ9NZM1 2061 aa14.83□□□□□ -0.03
LDLR-213ENST00000560502 ATP2C2O75185 946 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 TMEM191BP0C7N4 346 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 PFKLP17858 780 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 HNRNPH3P31942 346 aaKnown RBP14.83□□□□□ -0.04
LDLR-213ENST00000560502 OPRD1P41143 372 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 VAMP7P51809 220 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 ADKP55263 362 aaKnown RBP14.83□□□□□ -0.04
LDLR-213ENST00000560502 ZXDBP98169 803 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 SNRNP35Q16560 246 aaKnown RBP14.83□□□□□ -0.04
LDLR-213ENST00000560502 MEA1Q16626 185 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 EXOC3L4Q17RC7 722 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 TCERG1LQ5VWI1 586 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 LMBRD2Q68DH5 695 aaPredicted RBP14.83□□□□□ -0.04
LDLR-213ENST00000560502 TCEAL6Q6IPX3 200 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 VSTM1Q6UX27 236 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 C4orf50Q6ZRC1 276 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 TMEM139Q8IV31 216 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 SCN4BQ8IWT1 228 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 OR5B17Q8NGF7 314 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 SYN2Q92777 582 aaPredicted RBP14.83□□□□□ -0.04
LDLR-213ENST00000560502 TCEAL3Q969E4 200 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 MYLPFQ96A32 169 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 CEP295NLQ96MC4 621 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 LSM14BQ9BX40 385 aaKnown RBP14.83□□□□□ -0.04
LDLR-213ENST00000560502 LINC00597Q9H2U6 94 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 PCIF1Q9H4Z3 704 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 CRTAC1Q9NQ79 661 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 ANGPTL2Q9UKU9 493 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 CDH9Q9ULB4 789 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 PYCARDQ9ULZ3 195 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 PLXND1Q9Y4D7 1925 aa14.83□□□□□ -0.04
LDLR-213ENST00000560502 BCLAF3A2AJT9 711 aaKnown RBP14.82□□□□□ -0.04
LDLR-213ENST00000560502 DCLK1O15075 740 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 CHRM1P11229 460 aaPredicted RBP14.82□□□□□ -0.04
LDLR-213ENST00000560502 HDCP19113 662 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 KCNA4P22459 653 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 LMO2P25791 158 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 FMO5P49326 533 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 USP46P62068 366 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 PSMC1P62191 440 aaKnown RBP14.82□□□□□ -0.04
LDLR-213ENST00000560502 ELF2Q15723 593 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 RASSF3Q86WH2 238 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 KIAA1958Q8N8K9 716 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 USP33Q8TEY7 942 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 HPDLQ96IR7 371 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 ANKRD36BP1Q96IX9 119 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 TTLL2Q9BWV7 592 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 MMRN2Q9H8L6 949 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 NME7Q9Y5B8 376 aa14.82□□□□□ -0.04
LDLR-213ENST00000560502 GOLGA6L9A6NEM1 432 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 ZNF233A6NK53 670 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 K7EQS6 105 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 RHOBTB1O94844 696 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 KCNK5O95279 499 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 NFATC1O95644 943 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 OLFM2O95897 454 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 WARSP23381 471 aaKnown RBP14.81□□□□□ -0.04
LDLR-213ENST00000560502 CLCN1P35523 988 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 PDE6CP51160 858 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 KCNMA1Q12791 1236 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 MYO1EQ12965 1108 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 NR1H3Q13133 447 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 MAPRE1Q15691 268 aaKnown RBP14.81□□□□□ -0.04
LDLR-213ENST00000560502 RNF43Q68DV7 783 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 SMYD5Q6GMV2 418 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 CBWD2Q8IUF1 395 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 IGF2RP11717 2491 aa14.81□□□□□ -0.04
LDLR-213ENST00000560502 MYO18AQ92614 2054 aaKnown RBP14.8□□□□□ -0.04
LDLR-213ENST00000560502 ANTXRLA6NF34 631 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 LEFTY2O00292 366 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 TULP1O00294 542 aaPredicted RBP14.8□□□□□ -0.04
LDLR-213ENST00000560502 ZSCAN12O43309 604 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 TNNC2P02585 160 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 TUBB4AP04350 444 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 CYP17A1P05093 508 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 BDNFP23560 247 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 SLC7A9P82251 487 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 CREB5Q02930 508 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 CYP24A1Q07973 514 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 PSMD6Q15008 389 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 SURF1Q15526 300 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 DUOXA2Q1HG44 320 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 PMS2CLQ68D20 193 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 DENND5BQ6ZUT9 1274 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 WDR49Q8IV35 697 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 TTC16Q8NEE8 873 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 TSTD1Q8NFU3 115 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 CCDC26Q8TAB7 109 aa14.8□□□□□ -0.04
LDLR-213ENST00000560502 MYCBPAPQ8TBZ2 947 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms