RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	SLC15A4	Q8N697	577 aa		3.43	□□□□□ -1.86
SPG11-222	ENST00000560435	C12orf76	Q8N812	135 aa	Predicted RBP	3.43	□□□□□ -1.86
SPG11-222	ENST00000560435	JPH3	Q8WXH2	748 aa	Predicted RBP	3.43	□□□□□ -1.86
SPG11-222	ENST00000560435	MTMR8	Q96EF0	704 aa		3.43	□□□□□ -1.86
SPG11-222	ENST00000560435	TRMT61A	Q96FX7	289 aa	Known RBP	3.43	□□□□□ -1.86
SPG11-222	ENST00000560435	SLITRK1	Q96PX8	696 aa		3.43	□□□□□ -1.86
SPG11-222	ENST00000560435	CNNM1	Q9NRU3	951 aa		3.43	□□□□□ -1.86
SPG11-222	ENST00000560435	ZSCAN32	Q9NX65	697 aa		3.43	□□□□□ -1.86
SPG11-222	ENST00000560435	COG5	Q9UP83	839 aa		3.43	□□□□□ -1.86
SPG11-222	ENST00000560435	TMA7	Q9Y2S6	64 aa	Known RBP	3.43	□□□□□ -1.86
SPG11-222	ENST00000560435	TMEM272	A0A1B0GTI8	110 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435		F8W810	466 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	CLSTN1	O94985	981 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	UQCRC1	P31930	480 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	GAS1	P54826	345 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	RPL36A	P83881	106 aa	Known RBP	3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	TIAL1	Q01085	375 aa	Known RBP eCLIP	3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	KPNB1	Q14974	876 aa	Known RBP	3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	RBM23	Q86U06	439 aa	Known RBP	3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	SLC44A5	Q8NCS7	719 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	NGDN	Q8NEJ9	315 aa	Known RBP	3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	DNAJB14	Q8TBM8	379 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	NEUROG1	Q92886	237 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	TM2D2	Q9BX73	214 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	MS4A7	Q9GZW8	240 aa	Predicted RBP	3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	MSRB1	Q9NZV6	116 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	CPA4	Q9UI42	421 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	ATP8A1	Q9Y2Q0	1164 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	TNKS	O95271	1327 aa		3.42	□□□□□ -1.86
SPG11-222	ENST00000560435	RRH	O14718	337 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	FYB1	O15117	783 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	LINC01565	O15544	149 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	ZC3H11A	O75152	810 aa	Known RBP eCLIP	3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	USP12	O75317	370 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	CCND1	P24385	295 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	MCM5	P33992	734 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	RECQL	P46063	649 aa	Predicted RBP	3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	GUCY2F	P51841	1108 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	RRP1	P56182	461 aa	Known RBP	3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	LTB	Q06643	244 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	PTGR1	Q14914	329 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	TMEM199	Q8N511	208 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	P2RX7	Q99572	595 aa	Known RBP	3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	TRIM5	Q9C035	493 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	NUAK2	Q9H093	628 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	PIH1D1	Q9NWS0	290 aa	Known RBP	3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	FZD4	Q9ULV1	537 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	STXBP5L	Q9Y2K9	1186 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	CDY1	Q9Y6F8	540 aa		3.41	□□□□□ -1.86
SPG11-222	ENST00000560435	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	CD3EAP	O15446	510 aa	Known RBP	3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	GRID2	O43424	1007 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	SRGAP2	O75044	1071 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	CAMTA2	O94983	1202 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	PLG	P00747	810 aa	Predicted RBP	3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	ARFIP2	P53365	341 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	SLC12A2	P55011	1212 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	EGR4	Q05215	589 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	ODF3L2	Q3SX64	289 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	ZNF783	Q6ZMS7	281 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	CATIP	Q7Z7H3	387 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	PNPLA1	Q8N8W4	532 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	PLBD2	Q8NHP8	589 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	KBTBD7	Q8WVZ9	684 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	RAPGEF4	Q8WZA2	1011 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	MVB12A	Q96EY5	273 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	FCRL5	Q96RD9	977 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	TRIM54	Q9BYV2	358 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	GTPBP4	Q9BZE4	634 aa	Known RBP	3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	RBM38	Q9H0Z9	239 aa	Known RBP	3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	MLXIPL	Q9NP71	852 aa		3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	PAPOLB	Q9NRJ5	636 aa	Known RBP	3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	SIRT4	Q9Y6E7	314 aa	Predicted RBP	3.4	□□□□□ -1.87
SPG11-222	ENST00000560435	TRBV5-3	A0A0A0MS03	114 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435		A0A0G2JK05	382 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435		A8MVJ9	347 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	EXOC5	O00471	708 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	RPS6KB1	P23443	525 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	HOXA7	P31268	230 aa	Predicted RBP	3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	MLH1	P40692	756 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	ENTPD1	P49961	510 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	GPC5	P78333	572 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	CTBP1	Q13363	440 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	NADSYN1	Q6IA69	706 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	NPNT	Q6UXI9	565 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	TRAPPC11	Q7Z392	1133 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	MSI2	Q96DH6	328 aa	Known RBP	3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	SF3B5	Q9BWJ5	86 aa	Known RBP	3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	DPH1	Q9BZG8	443 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	ARMT1	Q9H993	441 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	XPNPEP3	Q9NQH7	507 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	ARL8B	Q9NVJ2	186 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	SEMA5B	Q9P283	1151 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	WNT16	Q9UBV4	365 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	ICAM5	Q9UMF0	924 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	SPATA31A1	Q5TZJ5	1347 aa		3.39	□□□□□ -1.87
SPG11-222	ENST00000560435	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	3.38	□□□□□ -1.87
SPG11-222	ENST00000560435	SLC22A23	A1A5C7	686 aa		3.38	□□□□□ -1.87
SPG11-222	ENST00000560435	ATG13	O75143	517 aa		3.38	□□□□□ -1.87

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms