RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 HDAC9Q9UKV0 1011 aa5.51□□□□□ -1.53
VPS13C-208ENST00000559119 MYBP10242 640 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 NANOS2P60321 138 aaKnown RBP5.5□□□□□ -1.53
VPS13C-208ENST00000559119 STK3Q13188 491 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 ARHGEF7Q14155 803 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 NPY5RQ15761 445 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 ZNF750Q32MQ0 723 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 DAB2IPQ5VWQ8 1189 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 MAEAQ7L5Y9 396 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 UBE2Q1Q7Z7E8 422 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 MICU3Q86XE3 530 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 COL23A1Q86Y22 540 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-208ENST00000559119 TPH2Q8IWU9 490 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 PNPLA1Q8N8W4 532 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 SMRP1Q8NCR6 262 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 EDC3Q96F86 508 aaKnown RBP5.5□□□□□ -1.53
VPS13C-208ENST00000559119 VPS50Q96JG6 964 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 HIPK2Q9H2X6 1198 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 USP29Q9HBJ7 922 aa5.5□□□□□ -1.53
VPS13C-208ENST00000559119 TRIM43BA6NCK2 446 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 CAPN8A6NHC0 703 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 A8MVJ9 347 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 FYB1O15117 783 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 IGSF3O75054 1194 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 TUSC2O75896 110 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 TOMM40O96008 361 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 CD63P08962 238 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 MCM5P33992 734 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 SUMO3P55854 103 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-208ENST00000559119 MTX1Q13505 466 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 ERV3-1Q14264 604 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 TTF1Q15361 905 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-208ENST00000559119 ST3GAL2Q16842 350 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 FAM110CQ1W6H9 321 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 TRIM43Q96BQ3 446 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-208ENST00000559119 THOC3Q96J01 351 aaKnown RBP5.49□□□□□ -1.53
VPS13C-208ENST00000559119 CPNE7Q9UBL6 633 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 ASAP1Q9ULH1 1129 aa5.49□□□□□ -1.53
VPS13C-208ENST00000559119 NOP58Q9Y2X3 529 aaKnown RBP5.49□□□□□ -1.53
VPS13C-208ENST00000559119 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-208ENST00000559119 USP19O94966 1318 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 INPPL1O15357 1258 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 PARP1P09874 1014 aaKnown RBP5.48□□□□□ -1.53
VPS13C-208ENST00000559119 BRAFP15056 766 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 ADRA1DP25100 572 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 TXNL4AP83876 142 aaKnown RBP5.48□□□□□ -1.53
VPS13C-208ENST00000559119 DEUP1Q05D60 604 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 MCL1Q07820 350 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 SLC29A2Q14542 456 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 ZNF793Q6ZN11 406 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 OVCH2Q7RTZ1 564 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 MMP21Q8N119 569 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 C11orf44Q8N8P7 122 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 FAM71DQ8N9W8 422 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 ZNF668Q96K58 619 aaPredicted RBP5.48□□□□□ -1.53
VPS13C-208ENST00000559119 DHX36Q9H2U1 1008 aaKnown RBP5.48□□□□□ -1.53
VPS13C-208ENST00000559119 STEAP1Q9UHE8 339 aa5.48□□□□□ -1.53
VPS13C-208ENST00000559119 AQP7P3A6NL99 342 aa5.47□□□□□ -1.53
VPS13C-208ENST00000559119 AGPSO00116 658 aa5.47□□□□□ -1.53
VPS13C-208ENST00000559119 SMAD6O43541 496 aaKnown RBP5.47□□□□□ -1.53
VPS13C-208ENST00000559119 AKAP10O43572 662 aa5.47□□□□□ -1.53
VPS13C-208ENST00000559119 CTNND1O60716 968 aaKnown RBP5.47□□□□□ -1.53
VPS13C-208ENST00000559119 T-ENOLP0DO92 83 aa5.47□□□□□ -1.53
VPS13C-208ENST00000559119 ZKSCAN1P17029 563 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-208ENST00000559119 CDKN2AP42771 156 aaKnown RBP5.47□□□□□ -1.53
VPS13C-208ENST00000559119 ZNF549Q6P9A3 640 aa5.47□□□□□ -1.53
VPS13C-208ENST00000559119 METTL25Q8N6Q8 603 aa5.47□□□□□ -1.53
VPS13C-208ENST00000559119 ARL8BQ9NVJ2 186 aa5.47□□□□□ -1.53
VPS13C-208ENST00000559119 STK32BQ9NY57 414 aa5.47□□□□□ -1.53
VPS13C-208ENST00000559119 AFF4Q9UHB7 1163 aaKnown RBP5.47□□□□□ -1.53
VPS13C-208ENST00000559119 RIMKLBQ9ULI2 386 aa5.47□□□□□ -1.53
VPS13C-208ENST00000559119 FZD4Q9ULV1 537 aa5.47□□□□□ -1.53
VPS13C-208ENST00000559119 CFAP69A5D8W1 941 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 ISM1B1AKI9 464 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 RAB27BO00194 218 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 SNX2O60749 519 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 TPH1P17752 444 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 ACVR2AP27037 513 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 CPT1AP50416 773 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 RAB27AP51159 221 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 GPC5P78333 572 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 KPNB1Q14974 876 aaKnown RBP5.46□□□□□ -1.54
VPS13C-208ENST00000559119 EPM2AIP1Q7L775 607 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-208ENST00000559119 YAF2Q8IY57 180 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 NMD3Q96D46 503 aaKnown RBP5.46□□□□□ -1.54
VPS13C-208ENST00000559119 KAZALD1Q96I82 304 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 NLRP4Q96MN2 994 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 HIST1H2AAQ96QV6 131 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 RTFDC1Q9BY42 306 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-208ENST00000559119 C22orf23Q9BZE7 217 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 NUAK2Q9H093 628 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 ZCWPW1Q9H0M4 648 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 TYW1Q9NV66 732 aaKnown RBP5.46□□□□□ -1.54
VPS13C-208ENST00000559119 DDX56Q9NY93 547 aaKnown RBP5.46□□□□□ -1.54
VPS13C-208ENST00000559119 TPCN1Q9ULQ1 816 aa5.46□□□□□ -1.54
VPS13C-208ENST00000559119 IGLV5-39A0A0G2JS06 123 aa5.45□□□□□ -1.54
VPS13C-208ENST00000559119 EIF4A1P60842 406 aaKnown RBP5.45□□□□□ -1.54
VPS13C-208ENST00000559119 CNN3Q15417 329 aaKnown RBP5.45□□□□□ -1.54
VPS13C-208ENST00000559119 MANEAQ5SRI9 462 aa5.45□□□□□ -1.54
VPS13C-208ENST00000559119 CLEC9AQ6UXN8 241 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms