RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 FAM71DQ8N9W8 422 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 UBA3Q8TBC4 463 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 ZNF398Q8TD17 642 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 LRRC39Q96DD0 335 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 PAFAH2Q99487 392 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 PAIP2Q9BPZ3 127 aaKnown RBP7.57□□□□□ -1.2
VPS13C-206ENST00000558338 TACO1Q9BSH4 297 aaKnown RBP7.57□□□□□ -1.2
VPS13C-206ENST00000558338 SLC4A5Q9BY07 1137 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 KATNBL1Q9H079 304 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 KLC2Q9H0B6 622 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 MLXIPLQ9NP71 852 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 PNPLA8Q9NP80 782 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 TXLNGQ9NUQ3 528 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 ABCF3Q9NUQ8 709 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 USH1CQ9Y6N9 552 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 SCN4AP35499 1836 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 PDCD11Q14690 1871 aaKnown RBP7.56□□□□□ -1.2
VPS13C-206ENST00000558338 C2orf72A6NCS6 295 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 GOLGA8MH3BSY2 632 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 PDHXO00330 501 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 TYROBPO43914 113 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 MGRN1O60291 552 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 TMEM63AO94886 807 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 UBOX5O94941 541 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 NPTXRO95502 500 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 INHBAP08476 426 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 CD48P09326 243 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 ADCYAP1R1P41586 468 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 MAGEA6P43360 314 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 PTPN9P43378 593 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 BCAR1P56945 870 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 WDR4P57081 412 aaKnown RBP7.56□□□□□ -1.2
VPS13C-206ENST00000558338 GPX6P59796 221 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 BST2Q10589 180 aaKnown RBP7.56□□□□□ -1.2
VPS13C-206ENST00000558338 BNIP1Q12981 228 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 GRB14Q14449 540 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 KCNJ11Q14654 390 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 FAM133BQ5BKY9 247 aaKnown RBP7.56□□□□□ -1.2
VPS13C-206ENST00000558338 FNBP1LQ5T0N5 605 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 ANKRD22Q5VYY1 191 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 MAP1SQ66K74 1059 aaPredicted RBP7.56□□□□□ -1.2
VPS13C-206ENST00000558338 SLC9A4Q6AI14 798 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 IQSEC1Q6DN90 963 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 CAPN12Q6ZSI9 719 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 CATSPER4Q7RTX7 472 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 DPP9Q86TI2 863 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 TMEM110Q86TL2 294 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 FAF2Q96CS3 445 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 ZBTB10Q96DT7 871 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 RAB3IPQ96QF0 476 aaPredicted RBP7.56□□□□□ -1.2
VPS13C-206ENST00000558338 PEBP4Q96S96 227 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 PPP1R16BQ96T49 567 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 ABHD16BQ9H3Z7 469 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 ECT2Q9H8V3 914 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 SPON1Q9HCB6 807 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 CNTN3Q9P232 1028 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 PRKAG2Q9UGJ0 569 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 PHTF1Q9UMS5 762 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 UBQLN1Q9UMX0 589 aaKnown RBP7.56□□□□□ -1.2
VPS13C-206ENST00000558338 NRCAMQ92823 1304 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 KAT6AQ92794 2004 aa7.56□□□□□ -1.2
VPS13C-206ENST00000558338 SMIM35A0A1B0GVV1 85 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 IQCA1LA6NCM1 817 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 HNRNPCL1O60812 293 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 EDF1O60869 148 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 SPAG7O75391 227 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 PFKMP08237 780 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 TROVE2P10155 538 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 NQO1P15559 274 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 KRT4P19013 534 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 CYP3A5P20815 502 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 GJA5P36382 358 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 NR2C2P49116 596 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 GTF2A1P52655 376 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 NCALDP61601 193 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 ELF3P78545 371 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 ZNF200P98182 395 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 DSG2Q14126 1118 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 CCDC14Q49A88 953 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 PPP1R26Q5T8A7 1209 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 LGSNQ5TDP6 509 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 CYP4V2Q6ZWL3 525 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 BZW1Q7L1Q6 419 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 C4orf33Q8N1A6 199 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 FAM172AQ8WUF8 416 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 SLC35F5Q8WV83 523 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 KLHL29Q96CT2 875 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 PARK7Q99497 189 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 FERMT1Q9BQL6 677 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 TRIM6Q9C030 488 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 PCDH18Q9HCL0 1135 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 NGRNQ9NPE2 291 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 SAE1Q9UBE0 346 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 ZNF180Q9UJW8 692 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 SNX9Q9Y5X1 595 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 HACD1B0YJ81 288 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 TRDMT1O14717 391 aaKnown RBP7.55□□□□□ -1.2
VPS13C-206ENST00000558338 KCNN4O15554 427 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 AP1G2O75843 785 aa7.55□□□□□ -1.2
VPS13C-206ENST00000558338 FAM155BO75949 473 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms