RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ARNTLO00327 626 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 SART1O43290 800 aaKnown RBP14.25□□□□□ -0.13
SHMT2-228ENST00000557302 IFNAR2P48551 515 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 ZXDBP98169 803 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 PRKCQQ04759 706 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 GOLGA8FQ08AF8 430 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 GOLGA8DPQ0D2H9 430 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 PDGFRLQ15198 375 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 MLF2Q15773 248 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-228ENST00000557302 SLC44A4Q53GD3 710 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 BHLHA9Q7RTU4 235 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 BMP8AQ7Z5Y6 402 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 TMEM110Q86TL2 294 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 WDTC1Q8N5D0 677 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 KIAA1958Q8N8K9 716 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 TMEM35BQ8NCS4 154 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 OSCP1Q8WVF1 389 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 DDX1Q92499 740 aaKnown RBP14.25□□□□□ -0.13
SHMT2-228ENST00000557302 GOLGA1Q92805 767 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 PBXIP1Q96AQ6 731 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 SHDQ96IW2 340 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 PPP1R13BQ96KQ4 1090 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 ZFRQ96KR1 1074 aaKnown RBP14.25□□□□□ -0.13
SHMT2-228ENST00000557302 FAM83CQ9BQN1 747 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 GKN1Q9NS71 199 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 DUS2Q9NX74 493 aaKnown RBP14.25□□□□□ -0.13
SHMT2-228ENST00000557302 NOCTQ9UK39 431 aaKnown RBP14.25□□□□□ -0.13
SHMT2-228ENST00000557302 NUDT5Q9UKK9 219 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 MYO6Q9UM54 1294 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 MDM4O15151 490 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 CBFA2T2O43439 604 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 LSM8O95777 96 aaKnown RBP14.24□□□□□ -0.13
SHMT2-228ENST00000557302 PDGFBP01127 241 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-228ENST00000557302 CCDC172P0C7W6 258 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 SNX16P57768 344 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 CDR2Q01850 454 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 ARID5AQ03989 594 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 EFEMP1Q12805 493 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 IER5LQ5T953 404 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 BSPRYQ5W0U4 402 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 HFE2Q6ZVN8 426 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 MIB1Q86YT6 1006 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 FMNL3Q8IVF7 1028 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 SCUBE3Q8IX30 993 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 IPO4Q8TEX9 1081 aaKnown RBP14.24□□□□□ -0.13
SHMT2-228ENST00000557302 CLEC4CQ8WTT0 213 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 RNF139Q8WU17 664 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 SLC20A1Q8WUM9 679 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 SYNCQ9H7C4 482 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 HEBP1Q9NRV9 189 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 ABCC13Q9NSE7 274 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 OLA1Q9NTK5 396 aaKnown RBP14.24□□□□□ -0.13
SHMT2-228ENST00000557302 RASAL2Q9UJF2 1139 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 STRIP2Q9ULQ0 834 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 SH3BP1Q9Y3L3 701 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 WNT6Q9Y6F9 365 aa14.24□□□□□ -0.13
SHMT2-228ENST00000557302 ZDBF2Q9HCK1 2354 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 E2F8A0AVK6 867 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 STK25O00506 426 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 SLC9A3R1O14745 358 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-228ENST00000557302 PAPSS1O43252 624 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-228ENST00000557302 LTFP02788 710 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 MMEP08473 750 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 IRF1P10914 325 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 FERP16591 822 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 CDH5P33151 784 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-228ENST00000557302 PBX1P40424 430 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 KPNA1P52294 538 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-228ENST00000557302 TNK2Q07912 1038 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 RUNX3Q13761 415 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 ITPRIPL2Q3MIP1 535 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 FIGNQ5HY92 759 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 TRIM68Q6AZZ1 485 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 TPRG1Q6ZUI0 275 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 FBXL6Q8N531 539 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 FLCNQ8NFG4 579 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 BAP1Q92560 729 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 EDEM1Q92611 657 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 ATP2A3Q93084 1043 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 FAM149B1Q96BN6 582 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 CPXM1Q96SM3 734 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 LRFN3Q9BTN0 628 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 TRIM62Q9BVG3 475 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 NUP58Q9BVL2 599 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 KLF16Q9BXK1 252 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-228ENST00000557302 EDEM3Q9BZQ6 932 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 XPO4Q9C0E2 1151 aaKnown RBP14.23□□□□□ -0.13
SHMT2-228ENST00000557302 EBF3Q9H4W6 596 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 TBC1D17Q9HA65 648 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 GTSE1Q9NYZ3 720 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 MARCH2Q9P0N8 246 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 LSM7Q9UK45 103 aaKnown RBP14.23□□□□□ -0.13
SHMT2-228ENST00000557302 PIAS3Q9Y6X2 628 aa14.23□□□□□ -0.13
SHMT2-228ENST00000557302 LRRC53A6NM62 1247 aa14.22□□□□□ -0.13
SHMT2-228ENST00000557302 SCAMP3O14828 347 aaKnown RBP14.22□□□□□ -0.13
SHMT2-228ENST00000557302 GLULP15104 373 aa14.22□□□□□ -0.13
SHMT2-228ENST00000557302 ARSAP15289 507 aa14.22□□□□□ -0.13
SHMT2-228ENST00000557302 MLLT6P55198 1093 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-228ENST00000557302 STARD6P59095 220 aa14.22□□□□□ -0.13
SHMT2-228ENST00000557302 COG7P83436 770 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms