RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 MGRN1O60291 552 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 MSCO60682 206 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 APOC2P02655 101 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 ARF4P18085 180 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 KLRC2P26717 231 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 AVPR1AP37288 418 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 PRAMEF19Q5SWL8 479 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 SWT1Q5T5J6 900 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 TMEM154Q6P9G4 183 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 TRMT10BQ6PF06 316 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 RHBDF2Q6PJF5 856 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 RASSF3Q86WH2 238 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 HASPINQ8TF76 798 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 FAM136AQ96C01 138 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 NAF1Q96HR8 494 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 SERAC1Q96JX3 654 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 FOXP3Q9BZS1 431 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 CYTH4Q9UIA0 394 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 AP4E1Q9UPM8 1137 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 PDE5AO76074 875 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 ASMTLO95671 621 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 TRUB2O95900 331 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 SNX16P57768 344 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 TNFAIP2Q03169 654 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 POU5F1BQ06416 359 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 KLF1Q13351 362 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 CUL3Q13618 768 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 BBS12Q6ZW61 710 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 XYLT1Q86Y38 959 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 PYROXD2Q8N2H3 581 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 WDTC1Q8N5D0 677 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 SLC7A14Q8TBB6 771 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 PTPRN2Q92932 1015 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 GBP5Q96PP8 586 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 NKX1-2Q9UD57 310 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 MAFBQ9Y5Q3 323 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 RPS6KL1Q9Y6S9 549 aa12.6□□□□□ -0.39
CCDC88C-211ENST00000556726 LAMB2P55268 1798 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 H3BRB1 525 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 M0QYT0 321 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 NVLO15381 856 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 LGR5O75473 907 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 MYL3P08590 195 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 VDRP11473 427 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 STIP1P31948 543 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 MGAT5Q09328 741 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 BST1Q10588 318 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 TTC39BQ5VTQ0 682 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 SLC26A11Q86WA9 606 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 BEST2Q8NFU1 509 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 FBXO41Q8TF61 875 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 EDEM1Q92611 657 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 SDCBP2Q9H190 292 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 TUT1Q9H6E5 874 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 ZMYND8Q9ULU4 1186 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 SLC12A4Q9UP95 1085 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 CNTNAP2Q9UHC6 1331 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 MT-CO1P00395 513 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 ITGAVP06756 1048 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 RPS12P25398 132 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 PEX6Q13608 980 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 RABGAP1LQ5R372 815 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 DNERQ8NFT8 737 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 OR6J1Q8NGC5 347 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 PRR11Q96HE9 360 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 PCYT2Q99447 389 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 DDX50Q9BQ39 737 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 MRPL45Q9BRJ2 306 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 TMEM109Q9BVC6 243 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 ZNF518BQ9C0D4 1074 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 DNAI2Q9GZS0 605 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 MAN1C1Q9NR34 630 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 TMPRSS4Q9NRS4 437 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 RABGEF1Q9UJ41 708 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 DNAJC16Q9Y2G8 782 aa12.59□□□□□ -0.39
CCDC88C-211ENST00000556726 CLDN5O00501 218 aa12.58□□□□□ -0.39
CCDC88C-211ENST00000556726 PPEF2O14830 753 aa12.58□□□□□ -0.39
CCDC88C-211ENST00000556726 ERVK-10P10266 1014 aa12.58□□□□□ -0.39
CCDC88C-211ENST00000556726 MGAT1P26572 445 aa12.58□□□□□ -0.39
CCDC88C-211ENST00000556726 GNL1P36915 607 aaPredicted RBP12.58□□□□□ -0.39
CCDC88C-211ENST00000556726 OLIG2Q13516 323 aa12.58□□□□□ -0.39
CCDC88C-211ENST00000556726 PMF1Q6P1K2 205 aa12.58□□□□□ -0.39
CCDC88C-211ENST00000556726 SLC4A11Q8NBS3 891 aa12.58□□□□□ -0.39
CCDC88C-211ENST00000556726 SLC2A14Q8TDB8 520 aa12.58□□□□□ -0.39
CCDC88C-211ENST00000556726 CELF6Q96J87 481 aaKnown RBP12.58□□□□□ -0.39
CCDC88C-211ENST00000556726 VCXQ9H320 206 aa12.58□□□□□ -0.39
CCDC88C-211ENST00000556726 NUDT5Q9UKK9 219 aa12.58□□□□□ -0.39
CCDC88C-211ENST00000556726 E9PBE3 544 aa12.58□□□□□ -0.4
CCDC88C-211ENST00000556726 AIM2O14862 343 aa12.58□□□□□ -0.4
CCDC88C-211ENST00000556726 KLHL41O60662 606 aa12.58□□□□□ -0.4
CCDC88C-211ENST00000556726 TRPA1O75762 1119 aa12.58□□□□□ -0.4
CCDC88C-211ENST00000556726 SKIP12755 728 aa12.58□□□□□ -0.4
CCDC88C-211ENST00000556726 SLC12A2P55011 1212 aa12.58□□□□□ -0.4
CCDC88C-211ENST00000556726 UBAP2LQ14157 1087 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-211ENST00000556726 DSTYKQ6XUX3 929 aa12.58□□□□□ -0.4
CCDC88C-211ENST00000556726 CDKL3Q8IVW4 592 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-211ENST00000556726 TEX9Q8N6V9 391 aa12.58□□□□□ -0.4
CCDC88C-211ENST00000556726 MTBPQ96DY7 904 aa12.58□□□□□ -0.4
CCDC88C-211ENST00000556726 NMUR2Q9GZQ4 415 aa12.58□□□□□ -0.4
CCDC88C-211ENST00000556726 ATXN3LQ9H3M9 355 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms