RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 DNAJB14Q8TBM8 379 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 RAPGEF4Q8WZA2 1011 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 NEUROG1Q92886 237 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 ATP2A3Q93084 1043 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 MTMR8Q96EF0 704 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 TRMT61AQ96FX7 289 aaKnown RBP4.09□□□□□ -1.75
SCFD1-218ENST00000556256 HIC2Q96JB3 615 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 CDK5RAP3Q96JB5 506 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 P2RX7Q99572 595 aaKnown RBP4.09□□□□□ -1.75
SCFD1-218ENST00000556256 MS4A7Q9GZW8 240 aaPredicted RBP4.09□□□□□ -1.75
SCFD1-218ENST00000556256 PCDH12Q9NPG4 1184 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 DECR2Q9NUI1 292 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 MSRB1Q9NZV6 116 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 PCDHA12Q9UN75 941 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 ATP8A1Q9Y2Q0 1164 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 COL4A3BPQ9Y5P4 624 aa4.09□□□□□ -1.75
SCFD1-218ENST00000556256 EVPLQ92817 2033 aa4.09□□□□□ -1.76
SCFD1-218ENST00000556256 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.08□□□□□ -1.76
SCFD1-218ENST00000556256 PLAUP00749 431 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 EPHA3P29320 983 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 P2RX3P56373 397 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 PPATQ06203 517 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 KEAP1Q14145 624 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 FAM57BQ71RH2 274 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 CATIPQ7Z7H3 387 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 FBXL14Q8N1E6 418 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 PLBD2Q8NHP8 589 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 MIB2Q96AX9 1013 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 MED30Q96HR3 178 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 TUBB6Q9BUF5 446 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 VN1R3Q9BXE9 311 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 ARMT1Q9H993 441 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 MLXIPLQ9NP71 852 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 ZSCAN32Q9NX65 697 aa4.08□□□□□ -1.76
SCFD1-218ENST00000556256 NOP58Q9Y2X3 529 aaKnown RBP4.08□□□□□ -1.76
SCFD1-218ENST00000556256 RRHO14718 337 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 FYB1O15117 783 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 GRID2O43424 1007 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 KATNA1O75449 491 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 POLD2P49005 469 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 LTBQ06643 244 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 CTBP1Q13363 440 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 KPNB1Q14974 876 aaKnown RBP4.07□□□□□ -1.76
SCFD1-218ENST00000556256 ODF3L2Q3SX64 289 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.07□□□□□ -1.76
SCFD1-218ENST00000556256 TMEM199Q8N511 208 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 ZCRB1Q8TBF4 217 aaKnown RBP4.07□□□□□ -1.76
SCFD1-218ENST00000556256 BCAS4Q8TDM0 211 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 MSI2Q96DH6 328 aaKnown RBP4.07□□□□□ -1.76
SCFD1-218ENST00000556256 MTFMTQ96DP5 389 aaKnown RBP4.07□□□□□ -1.76
SCFD1-218ENST00000556256 TRIM5Q9C035 493 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 ASAP1Q9ULH1 1129 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 PCDHA7Q9UN72 937 aa4.07□□□□□ -1.76
SCFD1-218ENST00000556256 SIRT4Q9Y6E7 314 aaPredicted RBP4.07□□□□□ -1.76
SCFD1-218ENST00000556256 A0A1W2PPC1 479 aa4.06□□□□□ -1.76
SCFD1-218ENST00000556256 SPTLC2O15270 562 aa4.06□□□□□ -1.76
SCFD1-218ENST00000556256 CAMTA2O94983 1202 aa4.06□□□□□ -1.76
SCFD1-218ENST00000556256 TBXAS1P24557 533 aaPredicted RBP4.06□□□□□ -1.76
SCFD1-218ENST00000556256 HOXA11P31270 313 aaPredicted RBP4.06□□□□□ -1.76
SCFD1-218ENST00000556256 MCM5P33992 734 aa4.06□□□□□ -1.76
SCFD1-218ENST00000556256 DEUP1Q05D60 604 aa4.06□□□□□ -1.76
SCFD1-218ENST00000556256 PTGR1Q14914 329 aa4.06□□□□□ -1.76
SCFD1-218ENST00000556256 LMBRD2Q68DH5 695 aaPredicted RBP4.06□□□□□ -1.76
SCFD1-218ENST00000556256 NPNTQ6UXI9 565 aa4.06□□□□□ -1.76
SCFD1-218ENST00000556256 ZBTB45Q96K62 511 aaPredicted RBP4.06□□□□□ -1.76
SCFD1-218ENST00000556256 GTPBP4Q9BZE4 634 aaKnown RBP4.06□□□□□ -1.76
SCFD1-218ENST00000556256 AGO4Q9HCK5 861 aaKnown RBP4.06□□□□□ -1.76
SCFD1-218ENST00000556256 PIH1D1Q9NWS0 290 aaKnown RBP4.06□□□□□ -1.76
SCFD1-218ENST00000556256 TNFRSF13BO14836 293 aaPredicted RBP4.05□□□□□ -1.76
SCFD1-218ENST00000556256 ALDH2P05091 517 aa4.05□□□□□ -1.76
SCFD1-218ENST00000556256 RECQLP46063 649 aaPredicted RBP4.05□□□□□ -1.76
SCFD1-218ENST00000556256 ARFIP2P53365 341 aa4.05□□□□□ -1.76
SCFD1-218ENST00000556256 GPC5P78333 572 aa4.05□□□□□ -1.76
SCFD1-218ENST00000556256 RPL36AP83881 106 aaKnown RBP4.05□□□□□ -1.76
SCFD1-218ENST00000556256 RBM23Q86U06 439 aaKnown RBP4.05□□□□□ -1.76
SCFD1-218ENST00000556256 SLC44A5Q8NCS7 719 aa4.05□□□□□ -1.76
SCFD1-218ENST00000556256 MVB12AQ96EY5 273 aa4.05□□□□□ -1.76
SCFD1-218ENST00000556256 NUAK2Q9H093 628 aa4.05□□□□□ -1.76
SCFD1-218ENST00000556256 TRIM36Q9NQ86 728 aa4.05□□□□□ -1.76
SCFD1-218ENST00000556256 CNNM1Q9NRU3 951 aa4.05□□□□□ -1.76
SCFD1-218ENST00000556256 FZD4Q9ULV1 537 aa4.05□□□□□ -1.76
SCFD1-218ENST00000556256 CDY1Q9Y6F8 540 aa4.05□□□□□ -1.76
SCFD1-218ENST00000556256 TRBV5-3A0A0A0MS03 114 aa4.04□□□□□ -1.76
SCFD1-218ENST00000556256 SLC22A23A1A5C7 686 aa4.04□□□□□ -1.76
SCFD1-218ENST00000556256 TMEM233B4DJY2 109 aa4.04□□□□□ -1.76
SCFD1-218ENST00000556256 EXOC5O00471 708 aa4.04□□□□□ -1.76
SCFD1-218ENST00000556256 BTN3A1O00481 513 aa4.04□□□□□ -1.76
SCFD1-218ENST00000556256 ZC3H11AO75152 810 aaKnown RBP eCLIP4.04□□□□□ -1.76
SCFD1-218ENST00000556256 PLGP00747 810 aaPredicted RBP4.04□□□□□ -1.76
SCFD1-218ENST00000556256 HOXA7P31268 230 aaPredicted RBP4.04□□□□□ -1.76
SCFD1-218ENST00000556256 MTHFSP49914 203 aa4.04□□□□□ -1.76
SCFD1-218ENST00000556256 CDKN1CP49918 316 aaPredicted RBP4.04□□□□□ -1.76
SCFD1-218ENST00000556256 RRP1P56182 461 aaKnown RBP4.04□□□□□ -1.76
SCFD1-218ENST00000556256 TIAL1Q01085 375 aaKnown RBP eCLIP4.04□□□□□ -1.76
SCFD1-218ENST00000556256 NUGGCQ68CJ6 796 aa4.04□□□□□ -1.76
SCFD1-218ENST00000556256 ANKRD13AQ8IZ07 590 aa4.04□□□□□ -1.76
SCFD1-218ENST00000556256 OIT3Q8WWZ8 545 aa4.04□□□□□ -1.76
SCFD1-218ENST00000556256 JPH3Q8WXH2 748 aaPredicted RBP4.04□□□□□ -1.76
SCFD1-218ENST00000556256 FCRL5Q96RD9 977 aa4.04□□□□□ -1.76
SCFD1-218ENST00000556256 TRIM54Q9BYV2 358 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms