RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 DEFB106AQ8N104 65 aa27.45■■□□□ 1.98
CCDC88C-205ENST00000553403 P3H4Q92791 437 aa27.45■■□□□ 1.98
CCDC88C-205ENST00000553403 SLC2A13Q96QE2 648 aa27.45■■□□□ 1.98
CCDC88C-205ENST00000553403 SMOQ99835 787 aa27.45■■□□□ 1.98
CCDC88C-205ENST00000553403 RTP3Q9BQQ7 232 aa27.45■■□□□ 1.98
CCDC88C-205ENST00000553403 FRMPD3Q5JV73 1810 aa27.45■■□□□ 1.98
CCDC88C-205ENST00000553403 APOL1O14791 398 aa27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 CAPN2P17655 700 aa27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 IBSPP21815 317 aaPredicted RBP27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 RGS19P49795 217 aa27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 MBTPS1Q14703 1052 aa27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 CA9Q16790 459 aa27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 PSTKQ8IV42 348 aaKnown RBP27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 ARFGAP2Q8N6H7 521 aa27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 RSPH1Q8WYR4 309 aa27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 NT5C3BQ969T7 300 aa27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 FAM149B1Q96BN6 582 aa27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 ADAM33Q9BZ11 813 aa27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 ROPN1BQ9BZX4 212 aaPredicted RBP27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 ROPN1Q9HAT0 212 aaPredicted RBP27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 SHOC2Q9UQ13 582 aa27.44■■□□□ 1.98
CCDC88C-205ENST00000553403 KBTBD13C9JR72 458 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 TTC4O95801 387 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 IFNB1P01574 187 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 RBP3P10745 1247 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 STIP1P31948 543 aaKnown RBP27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 BRCC3P46736 316 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 TKTL1P51854 596 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 RAB41Q5JT25 222 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 C6orf118Q5T5N4 469 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 RNASEH2BQ5TBB1 312 aaKnown RBP27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 FAM171BQ6P995 826 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 GLB1LQ6UWU2 654 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 PQLC3Q8N755 202 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 PLD5Q8N7P1 536 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 PGM2Q96G03 612 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 SMARCD1Q96GM5 515 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 SUSD3Q96L08 255 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 TYMPP19971 482 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 L1CAMP32004 1257 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 RDXP35241 583 aaKnown RBP27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 SULT1E1P49888 294 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 ROR1Q01973 937 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 INTS6LQ5JSJ4 861 aaKnown RBP27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 BNIPLQ7Z465 357 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 FTHL17Q9BXU8 183 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 CAPS2Q9BXY5 557 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 CNGB3Q9NQW8 809 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 STAP1Q9ULZ2 295 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 AP4E1Q9UPM8 1137 aa27.43■■□□□ 1.98
CCDC88C-205ENST00000553403 TSC2P49815 1807 aa27.42■■□□□ 1.98
CCDC88C-205ENST00000553403 ZFXP17010 805 aaPredicted RBP27.42■■□□□ 1.98
CCDC88C-205ENST00000553403 ZMIZ2Q8NF64 920 aa27.42■■□□□ 1.98
CCDC88C-205ENST00000553403 PCDH19Q8TAB3 1148 aa27.42■■□□□ 1.98
CCDC88C-205ENST00000553403 TLCD1Q96CP7 247 aa27.42■■□□□ 1.98
CCDC88C-205ENST00000553403 NPY6RQ99463 290 aa27.42■■□□□ 1.98
CCDC88C-205ENST00000553403 CSNK1G1Q9HCP0 422 aa27.42■■□□□ 1.98
CCDC88C-205ENST00000553403 BCCIPQ9P287 314 aaKnown RBP eCLIP27.42■■□□□ 1.98
CCDC88C-205ENST00000553403 I3L4J1 428 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 SMAPO00193 183 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 NDUFV1P49821 464 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 GDF10P55107 478 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 DAOAP59103 153 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 UBAP2Q5T6F2 1119 aaKnown RBP27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 NPNTQ6UXI9 565 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 UNC45BQ8IWX7 931 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 THEM5Q8N1Q8 247 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 LINC01599Q8WXQ3 324 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 NDRG1Q92597 394 aaKnown RBP27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 MYLPFQ96A32 169 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 ULBP1Q9BZM6 244 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 DHX35Q9H5Z1 703 aaKnown RBP27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 PRDM16Q9HAZ2 1276 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 POPDC2Q9HBU9 364 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 NINJ2Q9NZG7 142 aa27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 NOVA2Q9UNW9 492 aaKnown RBP27.41■■□□□ 1.98
CCDC88C-205ENST00000553403 HHLA1C9JL84 531 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 RPL22P35268 128 aaKnown RBP27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 ATXN1P54253 815 aaKnown RBP27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 BCAR1P56945 870 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 DCAF6Q58WW2 860 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 DNAJC21Q5F1R6 531 aaKnown RBP27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 DARS2Q6PI48 645 aaKnown RBP27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 FAM43BQ6ZT52 329 aaPredicted RBP27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 URGCPQ8TCY9 931 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 PKMYT1Q99640 499 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 PHACTR1Q9C0D0 580 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 RCOR3Q9P2K3 495 aaPredicted RBP27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 PCDHB8Q9UN66 801 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 FARP1Q9Y4F1 1045 aaPredicted RBP27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 CFAP69A5D8W1 941 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 COL6A1P12109 1028 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 SELPP16109 830 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 CYP2F1P24903 491 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 CDK7P50613 346 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 MAPRE1Q15691 268 aaKnown RBP27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 PAN2Q504Q3 1202 aaKnown RBP27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 C1orf228Q6PIY5 440 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 LRRC8DQ7L1W4 858 aa27.4■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms